Other packages > Find by keyword >

InteRD  

The Integrated and Robust Deconvolution
View on CRAN: Click here


Download and install InteRD package within the R console
Install from CRAN:
install.packages("InteRD")

Install from Github:
library("remotes")
install_github("cran/InteRD")

Install by package version:
library("remotes")
install_version("InteRD", "0.1.1")



Attach the package and use:
library("InteRD")
Maintained by
Chixiang Chen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-07-15
Latest Update:
Description:
We developed the Integrated and Robust Deconvolution algorithm to infer cell-type proportions from target bulk RNA-seq data. This package is able to effectively integrate deconvolution results from multiple scRNA-seq datasets and calibrates estimates from reference-based deconvolution by taking into account extra biological information as priors. Moreover, the proposed algorithm is robust to inaccurate external information imposed in the deconvolution system.
How to cite:
Chixiang Chen (2022). InteRD: The Integrated and Robust Deconvolution. R package version 0.1.1, https://cran.r-project.org/web/packages/InteRD. Accessed 23 Jul. 2026.
Previous versions and publish date:
0.1.0 (2022-07-15 18:00), 0.1.1 (2022-08-12 09:20), (2026-07-09 08:07)
Other packages that cited InteRD R package
View InteRD citation profile
Other R packages that InteRD depends, imports, suggests or enhances
Complete documentation for InteRD
Functions, R codes and Examples using the InteRD R package
Some associated functions: InteRD.predict.prop . InteRD1 . InteRD2 . Ref_free . evaluate . generateBulk . pop.ct.prop.scRNA . 
Some associated R codes: InteRD.R . generateBulk.R . supportingfunctions.R .  Full InteRD package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

fitscape  
Classes for Fitness Landscapes and Seascapes
Convenient classes to model fitness landscapes and fitness seascapes. A low-level package with whic ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
MixSIAR  
Bayesian Mixing Models in R
Creates and runs Bayesian mixing models to analyze biological tracer data (i.e. stable isotopes, fa ...
Download / Learn more Package Citations See dependency  
ODS  
Statistical Methods for Outcome-Dependent Sampling Designs
Outcome-dependent sampling (ODS) schemes are cost-effective ways to enhance study efficiency. In OD ...
Download / Learn more Package Citations See dependency  
gfcanalysis  
Tools for Working with Hansen et al. Global Forest Change Dataset
Supports analyses using the Global Forest Change dataset released by Hansen et al. gfcanalysis was ...
Download / Learn more Package Citations See dependency  

27,889

R Packages

239,283

Dependencies

74,019

Author Associations

27,890

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA