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InteRD  

The Integrated and Robust Deconvolution
View on CRAN: Click here


Download and install InteRD package within the R console
Install from CRAN:
install.packages("InteRD")

Install from Github:
library("remotes")
install_github("cran/InteRD")

Install by package version:
library("remotes")
install_version("InteRD", "0.1.1")



Attach the package and use:
library("InteRD")
Maintained by
Chixiang Chen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-07-15
Latest Update: 2022-08-12
Description:
We developed the Integrated and Robust Deconvolution algorithm to infer cell-type proportions from target bulk RNA-seq data. This package is able to effectively integrate deconvolution results from multiple scRNA-seq datasets and calibrates estimates from reference-based deconvolution by taking into account extra biological information as priors. Moreover, the proposed algorithm is robust to inaccurate external information imposed in the deconvolution system.
How to cite:
Chixiang Chen (2022). InteRD: The Integrated and Robust Deconvolution. R package version 0.1.1, https://cran.r-project.org/web/packages/InteRD. Accessed 07 Nov. 2024.
Previous versions and publish date:
0.1.0 (2022-07-15 18:00)
Other packages that cited InteRD R package
View InteRD citation profile
Other R packages that InteRD depends, imports, suggests or enhances
Complete documentation for InteRD
Functions, R codes and Examples using the InteRD R package
Some associated functions: InteRD.predict.prop . InteRD1 . InteRD2 . Ref_free . evaluate . generateBulk . pop.ct.prop.scRNA . 
Some associated R codes: InteRD.R . generateBulk.R . supportingfunctions.R .  Full InteRD package functions and examples
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