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IntLIM
View on CRAN: Click
here
Download and install IntLIM package within the R console
Install from CRAN:
install.packages("IntLIM")
Install from Github:
library("remotes")
install_github("cran/IntLIM") Install by package version:
library("remotes")
install_version("IntLIM", "2.0.2") Attach the package and use:
library("IntLIM")
Maintained by
Tara Eicher
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-08-22
Latest Update:
Description:
This workflow takes analyte levels from two different types of analytes (e.g. gene expression and metabolite abundance), meta-information on each analyte type, and sample outcome and metadata to identify analyte pairs that are significantly associated with a continuous or discrete outcome (e.g. drug response or tumor type). The following references describe the methods in this package: (1) Jalal K. Siddiqui, et al. (2018) , (2) Andrew Patt, et al. (2019) .
How to cite:
Tara Eicher (2022). IntLIM: Integration of Omics Data Using Linear Modeling. R package version 2.0.2, https://cran.r-project.org/web/packages/IntLIM. Accessed 26 Aug. 2026.
Previous versions and publish date:
2.0.2 (2022-08-22 17:10), (2026-07-09 08:07)
Other packages that cited IntLIM R package
View IntLIM citation profile
Other R packages that IntLIM depends,
imports, suggests or enhances
Functions, R codes and Examples using
the IntLIM R package
Some associated functions: BuildDataAndLines . CreateCrossValFolds . DistPvalues . DistRSquared . FilterData . FilterDataFolds . HistogramPairs . IntLIM-package . IntLimData-class . IntLimResults-class . InteractionCoefficientGraph . MarginalEffectsGraph . MarginalEffectsGraphDataframe . OutputData . OutputResults . PValueBoxPlots . PermutationCountSummary . PermutationPairSummary . PermuteIntLIM . PlotDistributions . PlotFoldOverlapUpSet . PlotPCA . PlotPair . PlotPairFlat . ProcessResults . ProcessResultsAllFolds . ProcessResultsContinuous . ReadData . RemovePlusInCovars . RunCrossValidation . RunIntLim . RunIntLimAllFolds . RunLM . ShowStats . getQuantileForInteractionCoefficient . getStatsAllLM . getstatsOneLM . multi.which . pvalCoefVolcano . runIntLIMApp .
Some associated R codes: 01_ReadData.R . 02_FilterData.R . 03_RunIntLim.R . 04_ProcessResults.R . AllClasses.R . IntLimResults_extendedfunctions.R . PermuteIntLIM.R . crossvalfunctions.R . internalfunctions.R . plottingfunctions.R . runShiny.R . statsfunctions.R . writingfunctions.R . Full IntLIM package functions and examples
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