Other packages > Find by keyword >

InfiniumPurify  

Estimate and Account for Tumor Purity in Cancer Methylation Data Analysis
View on CRAN: Click here


Download and install InfiniumPurify package within the R console
Install from CRAN:
install.packages("InfiniumPurify")

Install from Github:
library("remotes")
install_github("cran/InfiniumPurify")

Install by package version:
library("remotes")
install_version("InfiniumPurify", "1.3.1")



Attach the package and use:
library("InfiniumPurify")
Maintained by
Yufang Qin
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-01-14
Latest Update: 2017-01-14
Description:
The proportion of cancer cells in solid tumor sample, known as the tumor purity, has adverse impact on a variety of data analyses if not properly accounted for. We develop 'InfiniumPurify', which is a comprehensive R package for estimating and accounting for tumor purity based on DNA methylation Infinium 450k array data. 'InfiniumPurify' provides functionalities for tumor purity estimation. In addition, it can perform differential methylation detection and tumor sample clustering with the consideration of tumor purities.
How to cite:
Yufang Qin (2017). InfiniumPurify: Estimate and Account for Tumor Purity in Cancer Methylation Data Analysis. R package version 1.3.1, https://cran.r-project.org/web/packages/InfiniumPurify. Accessed 21 Nov. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited InfiniumPurify R package
View InfiniumPurify citation profile
Other R packages that InfiniumPurify depends, imports, suggests or enhances
Complete documentation for InfiniumPurify
Functions, R codes and Examples using the InfiniumPurify R package
Some associated functions: CancerTypeAbbr . InfiniumClust . InfiniumDMC . InfiniumPurify . abbr . beta.emp . getPurity . iDMC . 
Some associated R codes: InfiniumClust.R . InfiniumDMC.R . InfiniumPurify.R . getPurity.R .  Full InfiniumPurify package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
kgschart  
KGS Rank Graph Parser
Restore underlining numeric data from rating history graph of KGS (an online platform of the game o ...
Download / Learn more Package Citations See dependency  
crossrun  
Joint Distribution of Number of Crossings and Longest Run
Joint distribution of number of crossings and the longest run in a series of independent Bernoulli ...
Download / Learn more Package Citations See dependency  
RcppHNSW  
'Rcpp' Bindings for 'hnswlib', a Library for Approximate Nearest Neighbors
'Hnswlib' is a C++ library for Approximate Nearest Neighbors. This package provides a minimal R int ...
Download / Learn more Package Citations See dependency  
SCBiclust  
Identifies Mean, Variance, and Hierarchically Clustered Biclusters
Identifies a bicluster, a submatrix of the data such that the features and observations within the s ...
Download / Learn more Package Citations See dependency  
deductive  
Data Correction and Imputation Using Deductive Methods
Attempt to repair inconsistencies and missing values in data records by using information from vali ...
Download / Learn more Package Citations See dependency  

23,229

R Packages

199,929

Dependencies

62,984

Author Associations

23,230

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA