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InfiniumPurify  

Estimate and Account for Tumor Purity in Cancer Methylation Data Analysis
View on CRAN: Click here


Download and install InfiniumPurify package within the R console
Install from CRAN:
install.packages("InfiniumPurify")

Install from Github:
library("remotes")
install_github("cran/InfiniumPurify")

Install by package version:
library("remotes")
install_version("InfiniumPurify", "1.3.1")



Attach the package and use:
library("InfiniumPurify")
Maintained by
Yufang Qin
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-01-14
Latest Update: 2017-01-14
Description:
The proportion of cancer cells in solid tumor sample, known as the tumor purity, has adverse impact on a variety of data analyses if not properly accounted for. We develop 'InfiniumPurify', which is a comprehensive R package for estimating and accounting for tumor purity based on DNA methylation Infinium 450k array data. 'InfiniumPurify' provides functionalities for tumor purity estimation. In addition, it can perform differential methylation detection and tumor sample clustering with the consideration of tumor purities.
How to cite:
Yufang Qin (2017). InfiniumPurify: Estimate and Account for Tumor Purity in Cancer Methylation Data Analysis. R package version 1.3.1, https://cran.r-project.org/web/packages/InfiniumPurify. Accessed 07 Nov. 2024.
Previous versions and publish date:
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Complete documentation for InfiniumPurify
Functions, R codes and Examples using the InfiniumPurify R package
Some associated functions: CancerTypeAbbr . InfiniumClust . InfiniumDMC . InfiniumPurify . abbr . beta.emp . getPurity . iDMC . 
Some associated R codes: InfiniumClust.R . InfiniumDMC.R . InfiniumPurify.R . getPurity.R .  Full InfiniumPurify package functions and examples
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