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ImmuneSigR  

Immune Cell Signature Retrieval and Single-Cell Scoring
View on CRAN: Click here


Download and install ImmuneSigR package within the R console
Install from CRAN:
install.packages("ImmuneSigR")

Install from Github:
library("remotes")
install_github("cran/ImmuneSigR")

Install by package version:
library("remotes")
install_version("ImmuneSigR", "0.1.0")



Attach the package and use:
library("ImmuneSigR")
Maintained by
Yingyan Liang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-05-19
Latest Update: 2026-05-19
Description:
Provides a literature-derived database of immune cell markers formatted as Gene Matrix Transposed (GMT) files. Users can search immune cell signatures, retrieve marker lists, export GMT files, create custom marker sets, and score gene-by-cell expression matrices with dependency-free rank-based or mean-expression methods. Cell subpopulations are distinguished by their source PMIDs. For the core curation of the lung cell atlas, see Travaglini et al. (2020) <doi:10.1038/s41586-020-2922-4>. For the pan-cancer B cell signatures, see Fitzsimons et al. (2024) <doi:10.1016/j.ccell.2024.09.011>.
How to cite:
Yingyan Liang (2026). ImmuneSigR: Immune Cell Signature Retrieval and Single-Cell Scoring. R package version 0.1.0, https://cran.r-project.org/web/packages/ImmuneSigR. Accessed 09 Jun. 2026.
Previous versions and publish date:
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Complete documentation for ImmuneSigR
Functions, R codes and Examples using the ImmuneSigR R package
Full ImmuneSigR package functions and examples
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