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IgAScores
View on CRAN: Click
here
Download and install IgAScores package within the R console
Install from CRAN:
install.packages("IgAScores")
Install from Github:
library("remotes")
install_github("cran/IgAScores") Install by package version:
library("remotes")
install_version("IgAScores", "0.1.2") Attach the package and use:
library("IgAScores")
Maintained by
Matthew Jackson
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-09-01
Latest Update: 2020-09-01
Description:
Functions to calculate indices used to score immunoglobulin A (IgA) binding of bacteria in IgA sequencing (IgA-Seq) experiments.
This includes the original Kau and Palm indices and more recent methods as described in Jackson et al. (2020) .
Additionally the package contains a function to simulate IgA-Seq data and an example experimental data set for method testing.
How to cite:
Matthew Jackson (2020). IgAScores: Score Taxon-Level IgA Binding in IgA-Seq Experiments. R package version 0.1.2, https://cran.r-project.org/web/packages/IgAScores. Accessed 03 Jul. 2026.
Previous versions and publish date:
No previous versions
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Complete documentation for IgAScores
Functions, R codes and Examples using
the IgAScores R package
Some associated functions: igaprobability . igaprobabilityratio . igascores . kauindex . oligoMeta . oligoSpecies . palmindex . relabund . simulateigaseq . taxnamesplit .
Some associated R codes: igaprobability.R . igaprobabilityratio.R . igascores.R . kauindex.R . oligoMeta_data.R . oligoSpecies_data.R . palmindex.R . relabund.R . simulateigaseq.R . taxnamesplit.R . Full IgAScores package functions and examples
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