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IGST
View on CRAN: Click
here
Download and install IGST package within the R console
Install from CRAN:
install.packages("IGST")
Install from Github:
library("remotes")
install_github("cran/IGST")
Install by package version:
library("remotes")
install_version("IGST", "0.1.0")
Attach the package and use:
library("IGST")
Maintained by
Nitesh Kumar Sharma
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-01-31
Latest Update: 2020-01-31
Description:
Mining informative genes with certain biological meanings are important for clinical diagnosis of disease and discovery of disease mechanisms in plants and animals. This process involves identification of relevant genes and removal of redundant genes as much as possible from a whole gene set. This package selects the informative genes related to a specific trait using gene expression dataset. These trait specific genes are considered as informative genes. This package returns the informative gene set from the high dimensional gene expression data using a combination of methods SVM and MRMR (for feature selection) with bootstrapping procedure.
How to cite:
Nitesh Kumar Sharma (2020). IGST: Informative Gene Selection Tool. R package version 0.1.0, https://cran.r-project.org/web/packages/IGST. Accessed 03 Dec. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited IGST R package
View IGST citation profile
Other R packages that IGST depends,
imports, suggests or enhances
Complete documentation for IGST
Functions, R codes and Examples using
the IGST R package
Some associated functions: IGST.bootmrmrsvm.pval.cutoff . IGST.bootmrmrsvm.weight.cutoff . IGST.pval.bootmrmrsvm . IGST.weight.bootmrmrsvm . rice_cold .
Some associated R codes: IGST.bootmrmrsvm.pval.cutoff.R . IGST.bootmrmrsvm.weight.cutoff.R . IGST.pval.bootmrmrsvm.R . IGST.weight.bootmrmrsvm.R . Full IGST package functions and examples
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