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IDSL.IPA  

Intrinsic Peak Analysis (IPA) for HRMS Data
View on CRAN: Click here


Download and install IDSL.IPA package within the R console
Install from CRAN:
install.packages("IDSL.IPA")

Install from Github:
library("remotes")
install_github("cran/IDSL.IPA")

Install by package version:
library("remotes")
install_version("IDSL.IPA", "2.9")



Attach the package and use:
library("IDSL.IPA")
Maintained by
Dinesh Barupal
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-05-28
Latest Update: 2023-05-31
Description:
A multi-layered untargeted pipeline for high-throughput LC/HRMS data processing to extract signals of organic small molecules. The package performs ion pairing, peak detection, peak table alignment, retention time correction, aligned peak table gap filling, peak annotation and visualization of extracted ion chromatograms (EICs) and total ion chromatograms (TICs). The 'IDSL.IPA' package was introduced in .
How to cite:
Dinesh Barupal (2021). IDSL.IPA: Intrinsic Peak Analysis (IPA) for HRMS Data. R package version 2.9, https://cran.r-project.org/web/packages/IDSL.IPA. Accessed 07 Nov. 2024.
Previous versions and publish date:
1.1 (2021-05-28 09:10), 1.2 (2021-06-30 08:10), 1.3 (2021-12-17 08:32), 1.4 (2022-03-22 11:10), 1.5 (2022-05-18 11:30), 1.6 (2022-06-07 10:10), 1.7 (2022-06-13 09:00), 1.8 (2022-06-26 23:30), 1.9 (2022-07-08 00:40), 2.0 (2022-08-06 09:30), 2.1 (2022-08-08 13:50), 2.2 (2022-09-09 19:03), 2.3 (2022-09-27 09:10), 2.4 (2022-10-01 16:00), 2.5 (2022-11-01 22:12), 2.6 (2023-01-07 05:10), 2.7 (2023-04-01 00:00), 2.8 (2023-05-19 00:10)
Other packages that cited IDSL.IPA R package
View IDSL.IPA citation profile
Other R packages that IDSL.IPA depends, imports, suggests or enhances
Complete documentation for IDSL.IPA
Functions, R codes and Examples using the IDSL.IPA R package
Some associated functions: IPA_CompoundsAnnotation . IPA_GapFiller . IPA_IonPairing . IPA_MSdeconvoluter . IPA_PeakAlignment . IPA_PeakAnalyzer . IPA_PeaklistAnnotation . IPA_aggregate . IPA_baselineDeveloper . IPA_logRecorder . IPA_peak_alignment_folder_xlsxAnalyzer . IPA_spectraListAggregator . IPA_targeted . IPA_targeted_xlsxAnalyzer . IPA_workflow . IPA_xlsxAnalyzer . SNRbaseline . SNRrms . SNRxcms . XIC . alignedPeakPropertyTableCorrelationListCalculator . analyteRetentionTimeCorrector . chromatogramMatrix . chromatographicPeakAnalysis . chromatographicPeakDetector . derivative5pointsStencil . gapFillingCore . islocalminimum . islocaloptimum . loadRdata . mzClusteringRawXIC . mzRTindexer . opendir . peakAlignmentCore . peakAreaCalculator . peakAsymmetryFactorCalculator . peakDerivativeSkewnessCalculator . peakFrontingTailingResolver . peakGaussianityCalculator . peakPropertyTableFreqCalculator . peakPropertyTableMedianCalculator . peakPseudomomentsSymmetryCalculator . peakSharpnessCalculator . peakUSPtailingFactorCalculator . peakWidthCalculator . peakXcolFiller . peakXcolFlagger . peak_spline . plot_mz_eic . plot_simple_tic . primaryXICdeconvoluter . recursiveMZpeaklistCorrector . referenceRetentionTimeDetector . segment . targetedIonPairing . 
Some associated R codes: IPA_CompoundsAnnotation.R . IPA_GapFiller.R . IPA_IonPairing.R . IPA_MSdeconvoluter.R . IPA_PeakAlignment.R . IPA_PeakAnalyzer.R . IPA_PeaklistAnnotation.R . IPA_aggregate.R . IPA_baselineDeveloper.R . IPA_logRecorder.R . IPA_peak_alignment_folder_xlsxAnalyzer.R . IPA_spectraListAggregator.R . IPA_targeted.R . IPA_targeted_xlsxAnalyzer.R . IPA_workflow.R . IPA_xlsxAnalyzer.R . SNRbaseline.R . SNRrms.R . SNRxcms.R . XIC.R . alignedPeakPropertyTableCorrelationListCalculator.R . analyteRetentionTimeCorrector.R . chromatographicPeakAnalysis.R . chromatographicPeakDetector.R . derivative5pointsStencil.R . gapFillingCore.R . global.R . islocalminimum.R . islocaloptimum.R . loadRdata.R . mzClusteringRawXIC.R . mzRTindexer.R . opendir.R . peakAlignmentCore.R . peakAreaCalculator.R . peakAsymmetryFactorCalculator.R . peakDerivativeSkewnessCalculator.R . peakFrontingTailingResolver.R . peakGaussianityCalculator.R . peakPropertyTableFreqCalculator.R . peakPropertyTableMedianCalculator.R . peakPseudomomentsSymmetryCalculator.R . peakSharpnessCalculator.R . peakUSPtailingFactorCalculator.R . peakWidthCalculator.R . peakXcolFiller.R . peakXcolFlagger.R . plot_mz_eic.R . plot_simple_tic.R . primaryXICdeconvoluter.R . recursiveMZpeaklistCorrector.R . referenceRetentionTimeDetector.R . targetedIonPairing.R .  Full IDSL.IPA package functions and examples
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