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IBDsim  

Simulation of Chromosomal Regions Shared by Family Members
View on CRAN: Click here


Download and install IBDsim package within the R console
Install from CRAN:
install.packages("IBDsim")

Install from Github:
library("remotes")
install_github("cran/IBDsim")

Install by package version:
library("remotes")
install_version("IBDsim", "0.9-8")



Attach the package and use:
library("IBDsim")
Maintained by
Magnus Dehli Vigeland
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2011-10-15
Latest Update: 2019-04-06
Description:
Simulation of segments shared identical-by-descent (IBD) by pedigree members. Using sex specific recombination rates along the human genome (Kong et. al (2010) ), phased chromosomes are simulated for all pedigree members, either by unconditional gene dropping or conditional on a specified IBD pattern. Additional functions provide summaries and further analysis of the simulated genomes.
How to cite:
Magnus Dehli Vigeland (2011). IBDsim: Simulation of Chromosomal Regions Shared by Family Members. R package version 0.9-8, https://cran.r-project.org/web/packages/IBDsim. Accessed 07 Nov. 2024.
Previous versions and publish date:
0.7 (2011-10-15 21:52), 0.8 (2011-10-24 15:37), 0.9-1 (2012-02-03 12:35), 0.9-2 (2012-12-18 17:38), 0.9-3 (2014-05-29 10:28), 0.9-4 (2014-05-30 20:50), 0.9-5 (2015-07-03 12:50), 0.9-6 (2016-04-28 11:50), 0.9-7 (2017-04-26 19:25)
Other packages that cited IBDsim R package
View IBDsim citation profile
Other R packages that IBDsim depends, imports, suggests or enhances
Complete documentation for IBDsim
Functions, R codes and Examples using the IBDsim R package
Some associated functions: DecodeMap . IBDsim . alleleSummary . dominant1 . oneLocusIBD . oneLocusJacquard . twoLocusIBD . twoLocusJacquard . 
Some associated R codes: IBDsim.R . alleleSummary.R . genedrop.R . ibd.runs.R . map_utils.R . meiosis.R . ped_utils.R . range_utils.R . summary.ibd.R . twoLocusIBD.R .  Full IBDsim package functions and examples
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