Other packages > Find by keyword >

Hmsc  

Hierarchical Model of Species Communities
View on CRAN: Click here


Download and install Hmsc package within the R console
Install from CRAN:
install.packages("Hmsc")

Install from Github:
library("remotes")
install_github("cran/Hmsc")

Install by package version:
library("remotes")
install_version("Hmsc", "3.3-7")



Attach the package and use:
library("Hmsc")
Maintained by
Otso Ovaskainen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-10-13
Latest Update: 2025-09-01
Description:
Hierarchical Modelling of Species Communities (HMSC) is a model-based approach for analyzing community ecological data. This package implements it in the Bayesian framework with Gibbs Markov chain Monte Carlo (MCMC) sampling (Tikhonov et al. (2020) ).
How to cite:
Otso Ovaskainen (2019). Hmsc: Hierarchical Model of Species Communities. R package version 3.3-7, https://cran.r-project.org/web/packages/Hmsc. Accessed 16 Jul. 2026.
Previous versions and publish date:
3.0-2 (2019-10-13 16:00), 3.0-4 (2019-12-16 13:50), 3.0-6 (2020-03-19 12:30), 3.0-9 (2020-10-29 18:30), 3.0-11 (2021-02-24 10:50), 3.0-13 (2022-08-11 16:10), (2026-07-09 08:06)
Other packages that cited Hmsc R package
View Hmsc citation profile
Other R packages that Hmsc depends, imports, suggests or enhances
Complete documentation for Hmsc
Functions, R codes and Examples using the Hmsc R package
Some associated functions: Hmsc-package . Hmsc . HmscRandomLevel . TD . alignPosterior . biPlot . c.Hmsc . computeAssociations . computeDataParameters . computeInitialParameters . computePredictedValues . computeVariancePartitioning . computeWAIC . constructGradient . constructKnots . convertToCodaObject . createPartition . evaluateModelFit . getPostEstimate . plotBeta . plotGamma . plotGradient . plotVariancePartitioning . poolMcmcChains . predict.Hmsc . predictLatentFactor . prepareGradient . sampleMcmc . samplePrior . setPriors.Hmsc . setPriors.HmscRandomLevel . setPriors . 
Some associated R codes: Hmsc.R . HmscRandomLevel.R . alignPosterior.R . biPlot.R . c.Hmsc.R . combineParameters.R . computeAssociations.R . computeDataParameters.R . computeInitialParameters.R . computePredictedValues.R . computePredictedValuesParallel.R . computeVariancePartitioning.R . computeWAIC.R . constructGradient.R . constructKnots.R . createPartition.R . data.R . evaluateModelFit.R . getPostEstimate.R . plotBeta.R . plotGamma.R . plotGradient.R . plotVariancePartitioning.R . poolMcmcChains.R . predict.R . predictLatentFactor.R . prepareGradient.R . print.Hmsc.R . print.HmscRandomLevel.R . sampleMcmc.R . samplePrior.R . setPriors.Hmsc.R . setPriors.HmscRandomLevel.R . setPriors.R . updateAlpha.R . updateBetaLambda.R . updateBetaSel.R . updateEta.R . updateGamma2.R . updateGammaEta.R . updateGammaV.R . updateInvSigma.R . updateLambdaPriors.R . updateLatentLoadingOrder.R . updateNf.R . updateRho.R . updateZ.R . updatewRRR.R . updatewRRRPriors.R .  Full Hmsc package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

Rnmr1D  
Perform the Complete Processing of a Set of Proton Nuclear Magnetic Resonance Spectra
Perform the complete processing of a set of proton nuclear magnetic resonance spectra from the free ...
Download / Learn more Package Citations See dependency  
stevedata  
Steve's Toy Data for Teaching About a Variety of Methodological, Social, and Political Topics
This is a collection of various kinds of data with broad uses for teaching. My students, and academ ...
Download / Learn more Package Citations See dependency  
wordnet  
WordNet Interface
An interface to WordNet using the Jawbone Java API to WordNet. WordNet (< ...
Download / Learn more Package Citations See dependency  
tarchetypes  
Archetypes for Targets
Function-oriented Make-like declarative pipelines for Statistics and data science are supported in t ...
Download / Learn more Package Citations See dependency  
bbdetection  
Identification of Bull and Bear States of the Market
Implements two algorithms of detecting Bull and Bear markets in stock prices: the algorithm of Pagan ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

27,806

R Packages

239,283

Dependencies

73,837

Author Associations

27,807

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA