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HiResTEC
View on CRAN: Click
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Download and install HiResTEC package within the R console
Install from CRAN:
install.packages("HiResTEC")
Install from Github:
library("remotes")
install_github("cran/HiResTEC")
Install by package version:
library("remotes")
install_version("HiResTEC", "0.62.3")
Attach the package and use:
library("HiResTEC")
Maintained by
Jan Lisec
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-05-07
Latest Update: 2024-02-26
Description:
Identifying labeled compounds in a 13C-tracer experiment in
non-targeted fashion is a cumbersome process. This package facilitates
such type of analyses by providing high level quality control plots,
deconvoluting and evaluating spectra and performing a multitude of
tests in an automatic fashion. The main idea is to use changing
intensity ratios of ion pairs from peak list generated with 'xcms' as
candidates and evaluate those against base peak chromatograms and
spectra information within the raw measurement data automatically.
The functionality is described in Hoffmann et al. (2018)
.
How to cite:
Jan Lisec (2018). HiResTEC: Non-Targeted Fluxomics on High-Resolution Mass-Spectrometry Data. R package version 0.62.3, https://cran.r-project.org/web/packages/HiResTEC. Accessed 02 Feb. 2025.
Previous versions and publish date:
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Other R packages that HiResTEC depends,
imports, suggests or enhances
Complete documentation for HiResTEC
Functions, R codes and Examples using
the HiResTEC R package
Some associated functions: CalcEnrichment . CalcMID . CalcTheoreticalMDV . CandidateBoxplot . DeconvoluteSpectrum . DetermineElementComposition . EvaluateCandidate . EvaluateCandidateListAgainstRawData . EvaluateMassTargetedForFlux . EvaluatePairsFromXCMSSet . EvaluateSpectrum . ExportHeuristicsTable . GenerateCandXLSX . GenerateQCPlots . RankCandidateList . getMultipleBPC . groupval . mz_shift_corrector . plotBPC . plotMID . res_list . sam . xcms_cand .
Some associated R codes: CalcEnrichment.R . CalcMID.R . CalcTheoreticalMDV.R . CandidateBoxplot.R . DeconvoluteSpectrum.R . DetermineElementComposition.R . EvaluateCandidate.R . EvaluateCandidateListAgainstRawData.R . EvaluateMassTargetedForFlux.R . EvaluatePairsFromXCMSSet.R . EvaluateSpectrum.R . ExportHeuristicsTable.R . GenerateCandXLSX.R . GenerateQCPlots.R . RankCandidateList.R . getMultipleBPC.R . groupval.R . mz_shift_corrector-data.R . plotBPC.R . plotMID.R . res_list-data.R . sam-data.R . xcms_cand-data.R . Full HiResTEC package functions and examples
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