Other packages > Find by keyword >

HeritSeq  

Heritability of Gene Expression for Next-Generation Sequencing
View on CRAN: Click here


Download and install HeritSeq package within the R console
Install from CRAN:
install.packages("HeritSeq")

Install from Github:
library("remotes")
install_github("cran/HeritSeq")

Install by package version:
library("remotes")
install_version("HeritSeq", "1.0.2")



Attach the package and use:
library("HeritSeq")
Maintained by
W. Jenny Shi
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-01-04
Latest Update: 2021-07-12
Description:
Statistical framework to analyze heritability of gene expression based on next-generation sequencing data and simulating sequencing reads. Variance partition coefficients (VPC) are computed using linear mixed effects and generalized linear mixed effects models. Compound Poisson and negative binomial models are included. Reference: Rudra, Pratyaydipta, et al. "Model based heritability scores for high-throughput sequencing data." BMC bioinformatics 18.1 (2017): 143.
How to cite:
W. Jenny Shi (2017). HeritSeq: Heritability of Gene Expression for Next-Generation Sequencing. R package version 1.0.2, https://cran.r-project.org/web/packages/HeritSeq. Accessed 06 Nov. 2024.
Previous versions and publish date:
1.0.0 (2017-01-04 10:56), 1.0.1 (2019-02-11 22:13)
Other packages that cited HeritSeq R package
View HeritSeq citation profile
Other R packages that HeritSeq depends, imports, suggests or enhances
Complete documentation for HeritSeq
Functions, R codes and Examples using the HeritSeq R package
Some associated functions: computeVPC.CP . computeVPC.NB . fit.CP . fit.NB . fitComputeVPC.lmer . getBootCI . getReadMatrix.CP . getReadMatrix.NB . para_cp . para_nb . simData . simData_voom . simData_vst . strains . weights_voom . 
Some associated R codes: HeriTools.R . data.R .  Full HeritSeq package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

maic  
Matching-Adjusted Indirect Comparison
A generalised workflow for generation of subject weights to be used in Matching-Adjusted Indirect C ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
ddp  
Desirable Dietary Pattern
The desirable Dietary Pattern (DDP)/ PPH score measures the variety of food consumption. The (weigh ...
Download / Learn more Package Citations See dependency  
memoise  
'Memoisation' of Functions
Cache the results of a function so that when you call it again with the same arguments it returns t ...
Download / Learn more Package Citations See dependency  
mailR  
A Utility to Send Emails from R
Interface to Apache Commons Email to send emails from R. ...
Download / Learn more Package Citations See dependency  
equatiomatic  
Transform Models into 'LaTeX' Equations
The goal of equatiomatic is to reduce the painassociated with writing LaTeX formulas from fitted mod ...
Download / Learn more Package Citations See dependency  

23,092

R Packages

198,677

Dependencies

62,675

Author Associations

23,089

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA