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HeritSeq
View on CRAN: Click
here
Download and install HeritSeq package within the R console
Install from CRAN:
install.packages("HeritSeq")
Install from Github:
library("remotes")
install_github("cran/HeritSeq")
Install by package version:
library("remotes")
install_version("HeritSeq", "1.0.2")
Attach the package and use:
library("HeritSeq")
Maintained by
W. Jenny Shi
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-01-04
Latest Update: 2021-07-12
Description:
Statistical framework to analyze heritability of gene expression
based on next-generation sequencing data and simulating sequencing reads.
Variance partition coefficients (VPC) are computed using linear mixed effects
and generalized linear mixed effects models. Compound Poisson and negative
binomial models are included. Reference: Rudra, Pratyaydipta, et al. "Model based heritability scores for high-throughput sequencing data." BMC bioinformatics 18.1 (2017): 143.
How to cite:
W. Jenny Shi (2017). HeritSeq: Heritability of Gene Expression for Next-Generation Sequencing. R package version 1.0.2, https://cran.r-project.org/web/packages/HeritSeq. Accessed 06 Nov. 2024.
Other packages that cited HeritSeq R package
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Other R packages that HeritSeq depends,
imports, suggests or enhances
Complete documentation for HeritSeq
Functions, R codes and Examples using
the HeritSeq R package
Some associated functions: computeVPC.CP . computeVPC.NB . fit.CP . fit.NB . fitComputeVPC.lmer . getBootCI . getReadMatrix.CP . getReadMatrix.NB . para_cp . para_nb . simData . simData_voom . simData_vst . strains . weights_voom .
Some associated R codes: HeriTools.R . data.R . Full HeritSeq package functions and examples
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