Other packages > Find by keyword >

HardyWeinberg  

Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
View on CRAN: Click here


Download and install HardyWeinberg package within the R console
Install from CRAN:
install.packages("HardyWeinberg")

Install from Github:
library("remotes")
install_github("cran/HardyWeinberg")

Install by package version:
library("remotes")
install_version("HardyWeinberg", "1.7.8")



Attach the package and use:
library("HardyWeinberg")
Maintained by
Jan Graffelman
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2007-10-02
Latest Update: 2022-05-07
Description:
Contains tools for exploring Hardy-Weinberg equilibrium (Hardy, 1908; Weinberg, 1908) for bi and multi-allelic genetic marker data. All classical tests (chi-square, exact, likelihood-ratio and permutation tests) with bi-allelic variants are included in the package, as well as functions for power computation and for the simulation of marker data under equilibrium and disequilibrium. Routines for dealing with markers on the X-chromosome are included (Graffelman & Weir, 2016) , including Bayesian procedures. Some exact and permutation procedures also work with multi-allelic variants. Special test procedures that jointly address Hardy-Weinberg equilibrium and equality of allele frequencies in both sexes are supplied, for the bi and multi-allelic case. Functions for testing equilibrium in the presence of missing data by using multiple imputation are also provided. Implements several graphics for exploring the equilibrium status of a large set of bi-allelic markers: ternary plots with acceptance regions, log-ratio plots and Q-Q plots. The functionality of the package is explained in detail in a related JSS paper .
How to cite:
Jan Graffelman (2007). HardyWeinberg: Statistical Tests and Graphics for Hardy-Weinberg Equilibrium. R package version 1.7.8, https://cran.r-project.org/web/packages/HardyWeinberg. Accessed 18 Feb. 2025.
Previous versions and publish date:
1.0 (2007-10-02 18:49), 1.1 (2007-10-03 15:58), 1.2 (2008-04-22 12:37), 1.3 (2009-03-27 17:40), 1.4.1 (2012-03-20 22:30), 1.4 (2009-11-23 19:19), 1.5.1 (2013-11-14 07:19), 1.5.2 (2013-11-25 20:03), 1.5.4 (2014-08-11 21:44), 1.5.5 (2015-02-26 16:46), 1.5.6 (2016-03-29 20:04), 1.5.7 (2017-04-22 06:44), 1.5.8 (2017-05-17 09:18), 1.5.9 (2017-12-16 23:37), 1.6.1 (2018-05-30 00:46), 1.6.2 (2019-04-14 22:53), 1.6.3 (2019-06-29 06:50), 1.6.6 (2020-08-13 07:22), 1.6.7 (2020-09-20 06:40), 1.6.8 (2020-09-20 16:50), 1.6.9 (2020-12-08 19:00), 1.7.0 (2020-12-14 12:00), 1.7.1 (2021-01-04 18:30), 1.7.2 (2021-04-28 17:30), 1.7.3 (2021-11-17 12:50), 1.7.4 (2021-11-26 17:11), 1.7.5 (2022-05-07 14:20), 1.7.7 (2024-03-31 18:30)
Other packages that cited HardyWeinberg R package
View HardyWeinberg citation profile
Other R packages that HardyWeinberg depends, imports, suggests or enhances
Complete documentation for HardyWeinberg
Functions, R codes and Examples using the HardyWeinberg R package
Some associated functions: AFtest . AllelesToTriangular . Alzheimer . EAFExact . GenerateSamples . Glyoxalase . HWABO . HWAIC . HWAlltests . HWAlr . HWAlrPlot . HWChisq . HWChisqMat . HWChisqStats . HWClo . HWClr . HWClrPlot . HWCondProbAB . HWD . HWData . HWExact . HWExactMat . HWExactPrevious . HWExactStats . HWGenotypePlot . HWIlr . HWIlrPlot . HWLRAllTests . HWLRtest . HWLindley . HWLratio . HWMissing . HWNetwork . HWPerm.mult . HWPerm . HWPosterior . HWPower . HWQqplot . HWTernaryPlot . HWTriExact . HWf . HapMapCHBChr1 . HardyWeinberg-package . JPTmultiallelicsChr7 . JPTmultiallelicsChrX . JPTsnps . JPTtriallelicsChr7 . JPTtriallelicsChrX . MakeCounts . MakeFactor . Markers . Mourant . NistSTRs . TSIXTriAllelics . ThetatoF . UniqueGenotypeCounts . af . agcounts . alleles . dgraffelmanweir.bi . dlevene.bi . dlevene . fisherz . fold . genlabels . ifisherz . mac . maf . n.alleles . recode . strsort . toTriangular . vaf . 
Some associated R codes: AFtest.R . AllelesToTriangular.R . AuxQ.R . CheckRoots.R . Chisquare.R . Chisquare.x.R . CombineChisquare.R . CombineExact.R . CompProbDown.R . CompProbDownPower.R . CompProbUp.R . CompProbUpPower.R . CritSam.R . DnegLow.R . DnegUp.R . DposLow.R . DposUp.R . EAFExact.R . FtoTheta.R . GenerateSamples.R . H0.R . H1.R . H2.R . H3.R . HW.chi.mat.R . HWABO.R . HWAIC.R . HWAlltests.R . HWAlr.R . HWAlrPlot.R . HWChisq.R . HWChisqLowerl.R . HWChisqMat.R . HWChisqStats.R . HWChisqUpperl.R . HWChisqccCurve.R . HWClo.R . HWClr.R . HWClrPlot.R . HWCondProbAB.R . HWD.R . HWData.R . HWExact.R . HWExactMat.R . HWExactPower.R . HWExactPrevious.R . HWExactStats.R . HWGenotypePlot.R . HWIlr.R . HWIlrPlot.R . HWLRAllTests.R . HWLRtest.R . HWLindley.R . HWLowercl.R . HWLratio.R . HWMissing.R . HWNetwork.R . HWPerm.R . HWPerm.mult.R . HWPosterior.R . HWPower.R . HWQqplot.R . HWTernaryPlot.R . HWTriExact.R . HWUppercl.R . HWf.R . M11p.R . M12p.R . M13p.R . M14p.R . M15p.R . M21p.R . M22p.R . M23p.R . M24p.R . M25p.R . MakeCounts.R . MakeFactor.R . RcppExports.R . ThetatoF.R . UniqueGenotypeCounts.R . af.R . agcounts.R . allele.name.R . alleles.R . alowcurve.R . auxiliartable.R . auxlindley.R . combineC.R . cutoff.R . ddir.R . dens.auto.R . density.ma.gender.R . dgraffelmanweir.bi.R . dlevene.R . dlevene.bi.R . eqn3.R . eqnE.R . fder.R . fisherz.R . fitmodel12.R . fobj.R . fold.R . gen.outcomesXtri.R . generate.outcomes.R . genlabels.R . getpvals.R . gmeanrow.R . heterozyg.R . homozyg.R . hwe.modelCj.R . hwe.modelC.sol.R . hwe.modelEj.R . hwe.modelE.sol.R . ifisherz.R . is.wholenumber.R . limit.R . loglik.1.R . loglik.2.R . loglik.3.R . loglik.4.R . loglik.5.R . loglik.6.R . loglik.M11.R . loglik.M12.R . loglik.M14.R . loglik.M15.R . loglik.M21.R . loglik.M22.R . loglik.M23.R . loglik.M24.R . loglik.M25.R . mac.R . maf.R . make.outcomes.R . mipvalue.R . missingentirerow.R . n.alleles.R . n.outcomes.R . nearlyEqual.R . odd.R . outcomes.3.R . recode.R . sample.prob.R . sample.prob.last.R . strsort.R . subsamples.prob.R . toTriangular.R . vaf.R .  Full HardyWeinberg package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
readxlsb  
Read 'Excel' Binary (.xlsb) Workbooks
Import data from 'Excel' binary (.xlsb) workbooks into R. ...
Download / Learn more Package Citations See dependency  
OptGS  
Near-Optimal Group-Sequential Designs for Continuous Outcomes
Optimal group-sequential designs minimise some function of the expected and maximum sample size whil ...
Download / Learn more Package Citations See dependency  
RobustBayesianCopas  
Robust Bayesian Copas Selection Model
Fits the robust Bayesian Copas (RBC) selection model of Bai et al. (2020) for cor ...
Download / Learn more Package Citations See dependency  
MOSS  
Multi-Omic Integration via Sparse Singular Value Decomposition
High dimensionality, noise and heterogeneity among samples and features challenge the omic integrat ...
Download / Learn more Package Citations See dependency  
ppmf  
Read Census Privacy Protected Microdata Files
Implements data processing described in to align modern differentially ...
Download / Learn more Package Citations See dependency  

23,712

R Packages

205,795

Dependencies

64,332

Author Associations

23,631

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA