Other packages > Find by keyword >

HardyWeinberg  

Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
View on CRAN: Click here


Download and install HardyWeinberg package within the R console
Install from CRAN:
install.packages("HardyWeinberg")

Install from Github:
library("remotes")
install_github("cran/HardyWeinberg")

Install by package version:
library("remotes")
install_version("HardyWeinberg", "1.7.9")



Attach the package and use:
library("HardyWeinberg")
Maintained by
Jan Graffelman
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2007-10-02
Latest Update: 2024-04-06
Description:
Contains tools for exploring Hardy-Weinberg equilibrium (Hardy, 1908; Weinberg, 1908) for bi and multi-allelic genetic marker data. All classical tests (chi-square, exact, likelihood-ratio and permutation tests) with bi-allelic variants are included in the package, as well as functions for power computation and for the simulation of marker data under equilibrium and disequilibrium. Routines for dealing with markers on the X-chromosome are included (Graffelman & Weir, 2016) , including Bayesian procedures. Some exact and permutation procedures also work with multi-allelic variants. Special test procedures that jointly address Hardy-Weinberg equilibrium and equality of allele frequencies in both sexes are supplied, for the bi and multi-allelic case. Functions for testing equilibrium in the presence of missing data by using multiple imputation are also provided. Implements several graphics for exploring the equilibrium status of a large set of bi-allelic markers: ternary plots with acceptance regions, log-ratio plots and Q-Q plots. The functionality of the package is explained in detail in a related JSS paper .
How to cite:
Jan Graffelman (2007). HardyWeinberg: Statistical Tests and Graphics for Hardy-Weinberg Equilibrium. R package version 1.7.9, https://cran.r-project.org/web/packages/HardyWeinberg. Accessed 06 Aug. 2026.
Previous versions and publish date:
1.0 (2007-10-02 18:49), 1.1 (2007-10-03 15:58), 1.2 (2008-04-22 12:37), 1.3 (2009-03-27 17:40), 1.4.1 (2012-03-20 22:30), 1.4 (2009-11-23 19:19), 1.5.1 (2013-11-14 07:19), 1.5.2 (2013-11-25 20:03), 1.5.4 (2014-08-11 21:44), 1.5.5 (2015-02-26 16:46), 1.5.6 (2016-03-29 20:04), 1.5.7 (2017-04-22 06:44), 1.5.8 (2017-05-17 09:18), 1.5.9 (2017-12-16 23:37), 1.6.1 (2018-05-30 00:46), 1.6.2 (2019-04-14 22:53), 1.6.3 (2019-06-29 06:50), 1.6.6 (2020-08-13 07:22), 1.6.7 (2020-09-20 06:40), 1.6.8 (2020-09-20 16:50), 1.6.9 (2020-12-08 19:00), 1.7.0 (2020-12-14 12:00), 1.7.1 (2021-01-04 18:30), 1.7.2 (2021-04-28 17:30), 1.7.3 (2021-11-17 12:50), 1.7.4 (2021-11-26 17:11), 1.7.5 (2022-05-07 14:20), 1.7.7 (2024-03-31 18:30), 1.7.8 (2024-04-06 11:53), (2026-07-09 08:06)
Other packages that cited HardyWeinberg R package
View HardyWeinberg citation profile
Other R packages that HardyWeinberg depends, imports, suggests or enhances
Complete documentation for HardyWeinberg
Functions, R codes and Examples using the HardyWeinberg R package
Some associated functions: AFtest . AllelesToTriangular . Alzheimer . EAFExact . GenerateSamples . Glyoxalase . HWABO . HWAIC . HWAlltests . HWAlr . HWAlrPlot . HWChisq . HWChisqMat . HWChisqStats . HWClo . HWClr . HWClrPlot . HWCondProbAB . HWD . HWData . HWExact . HWExactMat . HWExactPrevious . HWExactStats . HWGenotypePlot . HWIlr . HWIlrPlot . HWLRAllTests . HWLRtest . HWLindley . HWLratio . HWMissing . HWNetwork . HWPerm.mult . HWPerm . HWPosterior . HWPower . HWQqplot . HWTernaryPlot . HWTriExact . HWf . HapMapCHBChr1 . HardyWeinberg-package . JPTmultiallelicsChr7 . JPTmultiallelicsChrX . JPTsnps . JPTtriallelicsChr7 . JPTtriallelicsChrX . MakeCounts . MakeFactor . Markers . Mourant . NistSTRs . TSIXTriAllelics . ThetatoF . UniqueGenotypeCounts . af . agcounts . alleles . dgraffelmanweir.bi . dlevene.bi . dlevene . fisherz . fold . genlabels . ifisherz . mac . maf . n.alleles . recode . strsort . toTriangular . vaf . 
Some associated R codes: AFtest.R . AllelesToTriangular.R . AuxQ.R . CheckRoots.R . Chisquare.R . Chisquare.x.R . CombineChisquare.R . CombineExact.R . CompProbDown.R . CompProbDownPower.R . CompProbUp.R . CompProbUpPower.R . CritSam.R . DnegLow.R . DnegUp.R . DposLow.R . DposUp.R . EAFExact.R . FtoTheta.R . GenerateSamples.R . H0.R . H1.R . H2.R . H3.R . HW.chi.mat.R . HWABO.R . HWAIC.R . HWAlltests.R . HWAlr.R . HWAlrPlot.R . HWChisq.R . HWChisqLowerl.R . HWChisqMat.R . HWChisqStats.R . HWChisqUpperl.R . HWChisqccCurve.R . HWClo.R . HWClr.R . HWClrPlot.R . HWCondProbAB.R . HWD.R . HWData.R . HWExact.R . HWExactMat.R . HWExactPower.R . HWExactPrevious.R . HWExactStats.R . HWGenotypePlot.R . HWIlr.R . HWIlrPlot.R . HWLRAllTests.R . HWLRtest.R . HWLindley.R . HWLowercl.R . HWLratio.R . HWMissing.R . HWNetwork.R . HWPerm.R . HWPerm.mult.R . HWPosterior.R . HWPower.R . HWQqplot.R . HWTernaryPlot.R . HWTriExact.R . HWUppercl.R . HWf.R . M11p.R . M12p.R . M13p.R . M14p.R . M15p.R . M21p.R . M22p.R . M23p.R . M24p.R . M25p.R . MakeCounts.R . MakeFactor.R . RcppExports.R . ThetatoF.R . UniqueGenotypeCounts.R . af.R . agcounts.R . allele.name.R . alleles.R . alowcurve.R . auxiliartable.R . auxlindley.R . combineC.R . cutoff.R . ddir.R . dens.auto.R . density.ma.gender.R . dgraffelmanweir.bi.R . dlevene.R . dlevene.bi.R . eqn3.R . eqnE.R . fder.R . fisherz.R . fitmodel12.R . fobj.R . fold.R . gen.outcomesXtri.R . generate.outcomes.R . genlabels.R . getpvals.R . gmeanrow.R . heterozyg.R . homozyg.R . hwe.modelCj.R . hwe.modelC.sol.R . hwe.modelEj.R . hwe.modelE.sol.R . ifisherz.R . is.wholenumber.R . limit.R . loglik.1.R . loglik.2.R . loglik.3.R . loglik.4.R . loglik.5.R . loglik.6.R . loglik.M11.R . loglik.M12.R . loglik.M14.R . loglik.M15.R . loglik.M21.R . loglik.M22.R . loglik.M23.R . loglik.M24.R . loglik.M25.R . mac.R . maf.R . make.outcomes.R . mipvalue.R . missingentirerow.R . n.alleles.R . n.outcomes.R . nearlyEqual.R . odd.R . outcomes.3.R . recode.R . sample.prob.R . sample.prob.last.R . strsort.R . subsamples.prob.R . toTriangular.R . vaf.R .  Full HardyWeinberg package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
lsmeans  
Least-Squares Means
Obtain least-squares means for linear, generalized linear, and mixed models. Compute contrasts or l ...
Download / Learn more Package Citations See dependency  
SAMBA  
Selection and Misclassification Bias Adjustment for Logistic Regression Models
Health research using data from electronic health records (EHR) has gained popularity, but miscla ...
Download / Learn more Package Citations See dependency  
TMDb  
Access to TMDb API
Provides an R-interface to the TMDb API (see TMDb API on < ...
Download / Learn more Package Citations See dependency  
RRedshiftSQL  
R Interface to the 'Redshift' Database
Superclasses 'PostgreSQL' connection to help enable full 'dplyr' functionality on 'Redshift'. ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA