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Hapi  

Inference of Chromosome-Length Haplotypes Using Genomic Data of Single Gamete Cells
View on CRAN: Click here


Download and install Hapi package within the R console
Install from CRAN:
install.packages("Hapi")

Install from Github:
library("remotes")
install_github("cran/Hapi")

Install by package version:
library("remotes")
install_version("Hapi", "0.0.3")



Attach the package and use:
library("Hapi")
Maintained by
Ruidong Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-07-28
Latest Update: 2018-07-28
Description:
Inference of chromosome-length haplotypes using a few haploid gametes of an individual. The gamete genotype data may be generated from various platforms including genotyping arrays and sequencing even with low-coverage. Hapi simply takes genotype data of known hetSNPs in single gamete cells as input and report the high-resolution haplotypes as well as confidence of each phased hetSNPs. The package also includes a module allowing downstream analyses and visualization of identified crossovers in the gametes.
How to cite:
Ruidong Li (2018). Hapi: Inference of Chromosome-Length Haplotypes Using Genomic Data of Single Gamete Cells. R package version 0.0.3, https://cran.r-project.org/web/packages/Hapi. Accessed 10 Mar. 2026.
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