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Hapi
View on CRAN: Click
here
Download and install Hapi package within the R console
Install from CRAN:
install.packages("Hapi")
Install from Github:
library("remotes")
install_github("cran/Hapi")
Install by package version:
library("remotes")
install_version("Hapi", "0.0.3")
Attach the package and use:
library("Hapi")
Maintained by
Ruidong Li
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-07-28
Latest Update: 2018-07-28
Description:
Inference of chromosome-length haplotypes using a few haploid
gametes of an individual. The gamete genotype data may be generated from various platforms
including genotyping arrays and sequencing even with low-coverage. Hapi simply takes
genotype data of known hetSNPs in single gamete cells as input and report the high-resolution
haplotypes as well as confidence of each phased hetSNPs. The package also includes a module
allowing downstream analyses and visualization of identified crossovers in the gametes.
How to cite:
Ruidong Li (2018). Hapi: Inference of Chromosome-Length Haplotypes Using Genomic Data of Single Gamete Cells. R package version 0.0.3, https://cran.r-project.org/web/packages/Hapi. Accessed 22 Dec. 2024.
Previous versions and publish date:
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Other R packages that Hapi depends,
imports, suggests or enhances
Complete documentation for Hapi
Functions, R codes and Examples using
the Hapi R package
Some associated functions: Hapi-package . base2num . crossover . gamete11 . gmt . hapiAssemble . hapiAssembleEnd . hapiAutoPhase . hapiBlockMPR . hapiCVCluster . hapiCVDistance . hapiCVMap . hapiCVResolution . hapiFilterError . hapiFrameSelection . hapiGameteView . hapiIdentifyCV . hapiImupte . hapiPhase . hg19 . num2base .
Some associated R codes: Hapi-package.R . Imputation.R . assembly.R . autophase.R . basic.R . crossover.R . draft.R . framework.R . visualization.R . Full Hapi package functions and examples
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