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HTSSIP
View on CRAN: Click
here
Download and install HTSSIP package within the R console
Install from CRAN:
install.packages("HTSSIP")
Install from Github:
library("remotes")
install_github("cran/HTSSIP")
Install by package version:
library("remotes")
install_version("HTSSIP", "1.4.1")
Attach the package and use:
library("HTSSIP")
Maintained by
Samuel Barnett
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-11-01
Latest Update: 2019-09-13
Description:
Functions for analyzing high throughput sequencing
stable isotope probing (HTS-SIP) data.
Analyses include high resolution stable isotope probing (HR-SIP),
multi-window high resolution stable isotope probing (MW-HR-SIP),
and quantitative stable isotope probing (q-SIP).
How to cite:
Samuel Barnett (2016). HTSSIP: High Throughput Sequencing of Stable Isotope Probing Data Analysis. R package version 1.4.1, https://cran.r-project.org/web/packages/HTSSIP. Accessed 22 Dec. 2024.
Previous versions and publish date:
Other packages that cited HTSSIP R package
View HTSSIP citation profile
Other R packages that HTSSIP depends,
imports, suggests or enhances
Complete documentation for HTSSIP
Functions, R codes and Examples using
the HTSSIP R package
Some associated functions: BD_shift . DESeq2_l2fc . HRSIP . HTSSIP . HTSSIP_sim . OTU_qPCR_trans . SIP_betaDiv_ord . as.Num . calc_Gi . calc_Mheavymax . calc_atom_excess . data-physeq_S2D1 . data-physeq_S2D1_l . data-physeq_S2D2 . data-physeq_S2D2_l . data-physeq_rep3 . data-physeq_rep3_qPCR . delta_BD . evaluate_matches . expr_param_extract . extract_expressions . extract_formats . filter_l2fc . format_metadata . fraction_overlap . get_treatment_params . gradient_sim . heavy_SIP . match_brace . match_placeholders . max_BD_range . overlap_wmean_dist . parse_dist . perc_overlap . phyloseq2df . phyloseq2table . phyloseq_list_ord_dfs . phyloseq_ord_plot . phyloseq_subset . physeq_format . physeq_list_betaDiv . physeq_list_ord . qPCR_sim . qSIP_atom_excess . qSIP_atom_excess_format . qSIP_bootstrap . stringterpolate . tss .
Some associated R codes: BD_ordinations.R . BD_shift.R . DESeq2_l2fc.R . HRSIP.R . HTSSIP.R . HTSSIP_sim.R . Util.R . chk.R . delta_BD.R . heavy_SIP.R . phyloseq_subset.R . pkg_data.R . qPCR.R . qSIP_atom_excess.R . qSIP_trans.R . stringterpolate.R . Full HTSSIP package functions and examples
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