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HMP  

Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP
View on CRAN: Click here


Download and install HMP package within the R console
Install from CRAN:
install.packages("HMP")

Install from Github:
library("remotes")
install_github("cran/HMP")

Install by package version:
library("remotes")
install_version("HMP", "2.0.1")



Attach the package and use:
library("HMP")
Maintained by
Berkley Shands
[Scholar Profile | Author Map]
First Published: 2011-11-04
Latest Update: 2019-08-31
Description:
Using Dirichlet-Multinomial distribution to provide several functions for formal hypothesis testing, power and sample size calculations for human microbiome experiments.
How to cite:
Berkley Shands (2011). HMP: Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP. R package version 2.0.1, https://cran.r-project.org/web/packages/HMP. Accessed 29 Apr. 2025.
Previous versions and publish date:
1.0 (2011-11-04 21:30), 1.1 (2012-04-25 06:39), 1.3.1 (2013-05-09 00:21), 1.3 (2013-04-13 06:41), 1.4.2 (2016-01-15 22:34), 1.4.3 (2016-03-04 22:42), 1.5.1 (2017-12-21 00:47), 1.5 (2017-07-06 12:14), 1.6 (2018-10-31 19:40), 2.0 (2019-08-26 23:50)
Other packages that cited HMP R package
View HMP citation profile
Other R packages that HMP depends, imports, suggests or enhances
Complete documentation for HMP
Functions, R codes and Examples using the HMP R package
Some associated functions: Barchart.data . C.alpha.multinomial . DM.MoM . DM.Rpart . Data.filter . Dirichlet.multinomial . Est.Pi . Gen.Alg.Consensus . Gen.Alg . HMP-internal . HMP-package . Kullback.Leibler . MC.Xdc.statistics . MC.Xmc.statistics . MC.Xmcupo.statistics . MC.Xoc.statistics . MC.Xsc.statistics . MC.ZT.statistics . Multinomial . Plot.MDS . Plot.Pi . Plot.RM.Barchart . Plot.RM.Dotplot . Test.Paired . Xdc.sevsample . Xmc.sevsample . Xmcupo.effectsize . Xmcupo.sevsample . Xoc.sevsample . Xsc.onesample . dmrp_covars . dmrp_data . formatDataSets . saliva . throat . tongue . tonsils . 
Some associated R codes: Barchart.data.R . C.alpha.multinomial.R . DM.MoM.R . DM.Rpart.Base.Old.R . DM.Rpart.Base.R . DM.Rpart.CV.Consensus.R . DM.Rpart.CV.R . DM.Rpart.R . Data.filter.R . Dirichlet.multinomial.R . Est.PI.R . Gen.Alg.Consensus.R . Gen.Alg.R . Kullback.Leibler.R . MC.Xdc.statistics.R . MC.Xmc.statistics.R . MC.Xmcupo.statistics.R . MC.Xoc.statistics.R . MC.Xsc.statistics.R . MC.ZT.statistics.R . Multinomial.R . Plot.MDS.R . Plot.PI.R . Plot.RM.Barchart.R . Plot.RM.Dotplot.R . T.statistics.R . Test.Paired.R . Xdc.sevsample.R . Xdc.statistics.Hnull.Ha.R . Xdc.statistics.MoM.R . Xdc.statistics.R . Xmc.sevsample.R . Xmc.statistics.Hnull.Ha.R . Xmc.statistics.R . Xmcupo.effectsize.R . Xmcupo.sevsample.R . Xmcupo.statistics.Hnull.Ha.R . Xmcupo.statistics.R . Xoc.sevsample.R . Xoc.statistics.Hnull.Ha.R . Xoc.statistics.R . Xsc.onesample.R . Xsc.statistics.Hnull.Ha.R . Xsc.statistics.R . Z.statistics.R . ZT.statistics.Hnull.Ha.R . formatDataSets.R . gaCreation.R . gaPlot.R . gaScoring.R . getBC.R . kullbackLeiber.R . loglikDM.R . pioest.R . rpartCI.R . rpartCS.R . rpartCV.R . rpartCVSingle.R . rpartEval.R . rpartInit.R . rpartSplit.R . rpartSplitOld.R . weirMoM.R .  Full HMP package functions and examples
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