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HHBayes  

Bayesian Household Transmission Modeling with 'Stan'
View on CRAN: Click here


Download and install HHBayes package within the R console
Install from CRAN:
install.packages("HHBayes")

Install from Github:
library("remotes")
install_github("cran/HHBayes")

Install by package version:
library("remotes")
install_version("HHBayes", "0.1.1")



Attach the package and use:
library("HHBayes")
Maintained by
Ke Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-04-10
Latest Update: 2026-04-10
Description:
Provides a streamlined pipeline to simulate household infection dynamics, estimate transmission parameters, and visualize epidemic timelines. Uses a Bayesian approach with 'Stan' that models transmission probability as a function of viral load, seasonality and infectivity, multiple infection episodes (reinfections), and waning immunity modeling. Li et al. (2026) <doi:10.64898/2026.04.01.26349903>).
How to cite:
Ke Li (2026). HHBayes: Bayesian Household Transmission Modeling with 'Stan'. R package version 0.1.1, https://cran.r-project.org/web/packages/HHBayes. Accessed 04 Oct. 2026.
Previous versions and publish date:
No previous versions
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View HHBayes citation profile
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Complete documentation for HHBayes
Functions, R codes and Examples using the HHBayes R package
Full HHBayes package functions and examples
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