Other packages > Find by keyword >

HDXBoxeR  

Analysis of Hydrogen-Deuterium Exchange Mass-Spectrometry Data
View on CRAN: Click here


Download and install HDXBoxeR package within the R console
Install from CRAN:
install.packages("HDXBoxeR")

Install from Github:
library("remotes")
install_github("cran/HDXBoxeR")

Install by package version:
library("remotes")
install_version("HDXBoxeR", "0.0.2")



Attach the package and use:
library("HDXBoxeR")
Maintained by
Maria K. Janowska
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-04-10
Latest Update: 2024-08-24
Description:
A protocol that facilitates the processing and analysis of Hydrogen-Deuterium Exchange Mass Spectrometry data using p-value statistics and Critical Interval analysis. It provides a pipeline for analyzing data from 'HDXExaminer' (Sierra Analytics, Trajan Scientific), automating matching and comparison of protein states through Welch's T-test and the Critical Interval statistical framework. Additionally, it simplifies data export, generates 'Pymol' scripts, and ensures calculations meet publication standards. 'HDXBoxeR' assists in various aspects of hydrogen-deuterium exchange data analysis, including reprocessing data, calculating parameters, identifying significant peptides, generating plots, and facilitating comparison between protein states. For details check papers by Hageman and Weis (2019) and Masson et al. (2019) .
How to cite:
Maria K. Janowska (2024). HDXBoxeR: Analysis of Hydrogen-Deuterium Exchange Mass-Spectrometry Data. R package version 0.0.2, https://cran.r-project.org/web/packages/HDXBoxeR. Accessed 25 Oct. 2026.
Previous versions and publish date:
0.0.1 (2024-04-10 22:10), (2026-07-09 08:06)
Other packages that cited HDXBoxeR R package
View HDXBoxeR citation profile
Other R packages that HDXBoxeR depends, imports, suggests or enhances
Complete documentation for HDXBoxeR
Functions, R codes and Examples using the HDXBoxeR R package
Full HDXBoxeR package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
imputeTS  
Time Series Missing Value Imputation
Imputation (replacement) of missing values in univariate time series. Offers several imputation fu ...
Download / Learn more Package Citations See dependency  
fstcore  
R Bindings to the 'Fstlib' Library
The 'fstlib' library provides multithreaded serialization of compressed data frames using the 'fst' ...
Download / Learn more Package Citations See dependency  
RcmdrPlugin.aRnova  
R Commander Plug-in for Repeated-Measures ANOVA
R Commander plug-in for repeated-measures and mixed-design ('split-plot') ANOVA. It adds a new men ...
Download / Learn more Package Citations See dependency  
CTT  
Classical Test Theory Functions
A collection of common test and item analyses from a classical test theory (CTT) framework. Analyses ...
Download / Learn more Package Citations See dependency  
guardianapi  
Access 'The Guardian' Newspaper Open Data API
Access to 'The Guardian' newspaper's open API , containing ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA