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HDXBoxeR  

Analysis of Hydrogen-Deuterium Exchange Mass-Spectrometry Data
View on CRAN: Click here


Download and install HDXBoxeR package within the R console
Install from CRAN:
install.packages("HDXBoxeR")

Install from Github:
library("remotes")
install_github("cran/HDXBoxeR")

Install by package version:
library("remotes")
install_version("HDXBoxeR", "0.0.2")



Attach the package and use:
library("HDXBoxeR")
Maintained by
Maria K. Janowska
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-04-10
Latest Update: 2024-04-10
Description:
A protocol that facilitates the processing and analysis of Hydrogen-Deuterium Exchange Mass Spectrometry data using p-value statistics and Critical Interval analysis. It provides a pipeline for analyzing data from 'HDXExaminer' (Sierra Analytics, Trajan Scientific), automating matching and comparison of protein states through Welch's T-test and the Critical Interval statistical framework. Additionally, it simplifies data export, generates 'Pymol' scripts, and ensures calculations meet publication standards. 'HDXBoxeR' assists in various aspects of hydrogen-deuterium exchange data analysis, including reprocessing data, calculating parameters, identifying significant peptides, generating plots, and facilitating comparison between protein states. For details check papers by Hageman and Weis (2019) and Masson et al. (2019) .
How to cite:
Maria K. Janowska (2024). HDXBoxeR: Analysis of Hydrogen-Deuterium Exchange Mass-Spectrometry Data. R package version 0.0.2, https://cran.r-project.org/web/packages/HDXBoxeR. Accessed 21 Nov. 2024.
Previous versions and publish date:
0.0.1 (2024-04-10 22:10)
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Complete documentation for HDXBoxeR
Functions, R codes and Examples using the HDXBoxeR R package
Full HDXBoxeR package functions and examples
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