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Grouphmap  

'Grouphmap' is an Automated One-Step Common Analysis of Batch Expression Profile
View on CRAN: Click here


Download and install Grouphmap package within the R console
Install from CRAN:
install.packages("Grouphmap")

Install from Github:
library("remotes")
install_github("cran/Grouphmap")

Install by package version:
library("remotes")
install_version("Grouphmap", "1.0.0")



Attach the package and use:
library("Grouphmap")
Maintained by
Yuchen Sun
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-09-04
Latest Update: 2023-09-04
Description:
The 'Grouphmap' was implemented in R, an open-source programming environment, and was released under the provided website. The difference analysis is based on the 'limma' package, which can cover gene and protein expression profiles (Reference: Matthew E Ritchie , Belinda Phipson , Di Wu , Yifang Hu , Charity W Law , Wei Shi , Gordon K Smyth (2015) ). The GO enrichment analysis is based on the 'clusterProfiler' package and supports three common species: human, mouse, and yeast (Reference: Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He (2012) ). The results of batch difference analysis and enrichment analysis are output in separate folders for easy viewing and further visualization of the results during the process. The results returned a heatmap in R and exported to 3 folders named DEG, go, and merge.
How to cite:
Yuchen Sun (2023). Grouphmap: 'Grouphmap' is an Automated One-Step Common Analysis of Batch Expression Profile. R package version 1.0.0, https://cran.r-project.org/web/packages/Grouphmap. Accessed 12 Nov. 2024.
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