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GillespieSSA2
View on CRAN: Click
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Download and install GillespieSSA2 package within the R console
Install from CRAN:
install.packages("GillespieSSA2")
Install from Github:
library("remotes")
install_github("cran/GillespieSSA2") Install by package version:
library("remotes")
install_version("GillespieSSA2", "0.3.0") Attach the package and use:
library("GillespieSSA2")
Maintained by
Robrecht Cannoodt
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-08-05
Latest Update: 2023-01-23
Description:
A fast, scalable, and versatile framework for
simulating large systems with Gillespie's Stochastic Simulation
Algorithm ('SSA'). This package is the spiritual successor to the
'GillespieSSA' package originally written by Mario Pineda-Krch.
Benefits of this package include major speed improvements (>100x),
easier to understand documentation, and many unit tests that try to
ensure the package works as intended. Cannoodt and Saelens et al. (2021)
.
How to cite:
Robrecht Cannoodt (2019). GillespieSSA2: Gillespie's Stochastic Simulation Algorithm for Impatient People. R package version 0.3.0, https://cran.r-project.org/web/packages/GillespieSSA2. Accessed 09 Oct. 2026.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for GillespieSSA2
Functions, R codes and Examples using
the GillespieSSA2 R package
Some associated functions: GillespieSSA2 . compile_reactions . ode_em . plot_ssa . port_reactions . print_ssa . reaction . ssa . ssa_btl . ssa_etl . ssa_exact .
Some associated R codes: RcppExports.R . compile_reactions.R . ode_em.R . package.R . port_reactions.R . reaction.R . ssa_btl.R . ssa_etl.R . ssa_exact.R . ssa_method.R . ssa_plot.R . ssa_simulation.R . zzz.R . Full GillespieSSA2 package functions and examples
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