Other packages > Find by keyword >

GillespieSSA2  

Gillespie's Stochastic Simulation Algorithm for Impatient People
View on CRAN: Click here


Download and install GillespieSSA2 package within the R console
Install from CRAN:
install.packages("GillespieSSA2")

Install from Github:
library("remotes")
install_github("cran/GillespieSSA2")

Install by package version:
library("remotes")
install_version("GillespieSSA2", "0.3.0")



Attach the package and use:
library("GillespieSSA2")
Maintained by
Robrecht Cannoodt
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-08-05
Latest Update: 2023-01-23
Description:
A fast, scalable, and versatile framework for simulating large systems with Gillespie's Stochastic Simulation Algorithm ('SSA'). This package is the spiritual successor to the 'GillespieSSA' package originally written by Mario Pineda-Krch. Benefits of this package include major speed improvements (>100x), easier to understand documentation, and many unit tests that try to ensure the package works as intended. Cannoodt and Saelens et al. (2021) .
How to cite:
Robrecht Cannoodt (2019). GillespieSSA2: Gillespie's Stochastic Simulation Algorithm for Impatient People. R package version 0.3.0, https://cran.r-project.org/web/packages/GillespieSSA2. Accessed 05 Mar. 2026.
Previous versions and publish date:
0.2.4 (2019-08-05 18:20), 0.2.5 (2019-08-22 16:40), 0.2.6.1 (2020-03-14 17:50), 0.2.7 (2020-07-14 13:00), 0.2.8 (2021-05-18 11:50), 0.2.10 (2022-09-23 07:10)
Other packages that cited GillespieSSA2 R package
View GillespieSSA2 citation profile
Other R packages that GillespieSSA2 depends, imports, suggests or enhances
Complete documentation for GillespieSSA2
Functions, R codes and Examples using the GillespieSSA2 R package
Some associated functions: GillespieSSA2 . compile_reactions . ode_em . plot_ssa . port_reactions . print_ssa . reaction . ssa . ssa_btl . ssa_etl . ssa_exact . 
Some associated R codes: RcppExports.R . compile_reactions.R . ode_em.R . package.R . port_reactions.R . reaction.R . ssa_btl.R . ssa_etl.R . ssa_exact.R . ssa_method.R . ssa_plot.R . ssa_simulation.R . zzz.R .  Full GillespieSSA2 package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
ClimClass  
Climate Classification According to Several Indices
Classification of climate according to Koeppen - Geiger, of aridity indices, of continentality indi ...
Download / Learn more Package Citations See dependency  
diffIRT  
Diffusion IRT Models for Response and Response Time Data
Package to fit diffusion-based IRT models to response and response time data. Models are fit using ...
Download / Learn more Package Citations See dependency  
roccv  
ROC for Cross Validation Results
Cross validate large genetic data while specifying clinical variables that should always be in the m ...
Download / Learn more Package Citations See dependency  
neat  
Efficient Network Enrichment Analysis Test
Includes functions and examples to compute NEAT, the Network Enrichment Analysis Test described in ...
Download / Learn more Package Citations See dependency  
pinp  
'pinp' is not 'PNAS'
A 'PNAS'-alike style for 'rmarkdown', derived from the 'Proceedings of the National Academy of Scie ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,244

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA