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GillespieSSA2  

Gillespie's Stochastic Simulation Algorithm for Impatient People
View on CRAN: Click here


Download and install GillespieSSA2 package within the R console
Install from CRAN:
install.packages("GillespieSSA2")

Install from Github:
library("remotes")
install_github("cran/GillespieSSA2")

Install by package version:
library("remotes")
install_version("GillespieSSA2", "0.3.0")



Attach the package and use:
library("GillespieSSA2")
Maintained by
Robrecht Cannoodt
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-08-05
Latest Update: 2023-01-23
Description:
A fast, scalable, and versatile framework for simulating large systems with Gillespie's Stochastic Simulation Algorithm ('SSA'). This package is the spiritual successor to the 'GillespieSSA' package originally written by Mario Pineda-Krch. Benefits of this package include major speed improvements (>100x), easier to understand documentation, and many unit tests that try to ensure the package works as intended. Cannoodt and Saelens et al. (2021) .
How to cite:
Robrecht Cannoodt (2019). GillespieSSA2: Gillespie's Stochastic Simulation Algorithm for Impatient People. R package version 0.3.0, https://cran.r-project.org/web/packages/GillespieSSA2. Accessed 29 Oct. 2026.
Previous versions and publish date:
0.2.4 (2019-08-05 18:20), 0.2.5 (2019-08-22 16:40), 0.2.6.1 (2020-03-14 17:50), 0.2.7 (2020-07-14 13:00), 0.2.8 (2021-05-18 11:50), 0.2.10 (2022-09-23 07:10), (2026-07-09 08:05)
Other packages that cited GillespieSSA2 R package
View GillespieSSA2 citation profile
Other R packages that GillespieSSA2 depends, imports, suggests or enhances
Complete documentation for GillespieSSA2
Functions, R codes and Examples using the GillespieSSA2 R package
Some associated functions: GillespieSSA2 . compile_reactions . ode_em . plot_ssa . port_reactions . print_ssa . reaction . ssa . ssa_btl . ssa_etl . ssa_exact . 
Some associated R codes: RcppExports.R . compile_reactions.R . ode_em.R . package.R . port_reactions.R . reaction.R . ssa_btl.R . ssa_etl.R . ssa_exact.R . ssa_method.R . ssa_plot.R . ssa_simulation.R . zzz.R .  Full GillespieSSA2 package functions and examples
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