Other packages > Find by keyword >

GillespieSSA  

Gillespie's Stochastic Simulation Algorithm (SSA)
View on CRAN: Click here


Download and install GillespieSSA package within the R console
Install from CRAN:
install.packages("GillespieSSA")

Install from Github:
library("remotes")
install_github("cran/GillespieSSA")

Install by package version:
library("remotes")
install_version("GillespieSSA", "0.6.2")



Attach the package and use:
library("GillespieSSA")
Maintained by
Robrecht Cannoodt
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2007-09-21
Latest Update: 2022-03-10
Description:
Provides a simple to use, intuitive, and extensible interface to several stochastic simulation algorithms for generating simulated trajectories of finite population continuous-time model. Currently it implements Gillespie's exact stochastic simulation algorithm (Direct method) and several approximate methods (Explicit tau-leap, Binomial tau-leap, and Optimized tau-leap). The package also contains a library of template models that can be run as demo models and can easily be customized and extended. Currently the following models are included, 'Decaying-Dimerization' reaction set, linear chain system, logistic growth model, 'Lotka' predator-prey model, Rosenzweig-MacArthur predator-prey model, 'Kermack-McKendrick' SIR model, and a 'metapopulation' SIRS model. Pineda-Krch et al. (2008) .
How to cite:
Robrecht Cannoodt (2007). GillespieSSA: Gillespie's Stochastic Simulation Algorithm (SSA). R package version 0.6.2, https://cran.r-project.org/web/packages/GillespieSSA. Accessed 21 Nov. 2024.
Previous versions and publish date:
0.2-0 (2007-09-21 17:17), 0.3-1 (2007-10-04 11:08), 0.4-0 (2007-10-14 11:47), 0.5-0 (2007-10-20 09:05), 0.5-1 (2008-01-16 10:15), 0.5-2 (2008-01-19 10:00), 0.5-3 (2008-02-21 20:55), 0.5-4 (2012-01-15 12:32), 0.6.0 (2019-07-15 00:19), 0.6.1 (2019-07-26 19:40)
Other packages that cited GillespieSSA R package
View GillespieSSA citation profile
Other R packages that GillespieSSA depends, imports, suggests or enhances
Complete documentation for GillespieSSA
Functions, R codes and Examples using the GillespieSSA R package
Some associated functions: GillespieSSA-package . ssa.btl . ssa.d . ssa.etl . ssa . ssa.otl . ssa.plot . 
Some associated R codes: GillespieSSA-package.R . parse.propensity.functions.R . ssa.R . ssa.btl.R . ssa.d.R . ssa.etl.R . ssa.method.R . ssa.nutiling.R . ssa.otl.R . ssa.plot.R .  Full GillespieSSA package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
RcppHNSW  
'Rcpp' Bindings for 'hnswlib', a Library for Approximate Nearest Neighbors
'Hnswlib' is a C++ library for Approximate Nearest Neighbors. This package provides a minimal R int ...
Download / Learn more Package Citations See dependency  
deductive  
Data Correction and Imputation Using Deductive Methods
Attempt to repair inconsistencies and missing values in data records by using information from vali ...
Download / Learn more Package Citations See dependency  
crossrun  
Joint Distribution of Number of Crossings and Longest Run
Joint distribution of number of crossings and the longest run in a series of independent Bernoulli ...
Download / Learn more Package Citations See dependency  
SCBiclust  
Identifies Mean, Variance, and Hierarchically Clustered Biclusters
Identifies a bicluster, a submatrix of the data such that the features and observations within the s ...
Download / Learn more Package Citations See dependency  
kgschart  
KGS Rank Graph Parser
Restore underlining numeric data from rating history graph of KGS (an online platform of the game o ...
Download / Learn more Package Citations See dependency  

23,229

R Packages

199,929

Dependencies

62,984

Author Associations

23,230

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA