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GillespieSSA  

Gillespie's Stochastic Simulation Algorithm (SSA)
View on CRAN: Click here


Download and install GillespieSSA package within the R console
Install from CRAN:
install.packages("GillespieSSA")

Install from Github:
library("remotes")
install_github("cran/GillespieSSA")

Install by package version:
library("remotes")
install_version("GillespieSSA", "0.6.2")



Attach the package and use:
library("GillespieSSA")
Maintained by
Robrecht Cannoodt
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2007-09-21
Latest Update: 2022-03-10
Description:
Provides a simple to use, intuitive, and extensible interface to several stochastic simulation algorithms for generating simulated trajectories of finite population continuous-time model. Currently it implements Gillespie's exact stochastic simulation algorithm (Direct method) and several approximate methods (Explicit tau-leap, Binomial tau-leap, and Optimized tau-leap). The package also contains a library of template models that can be run as demo models and can easily be customized and extended. Currently the following models are included, 'Decaying-Dimerization' reaction set, linear chain system, logistic growth model, 'Lotka' predator-prey model, Rosenzweig-MacArthur predator-prey model, 'Kermack-McKendrick' SIR model, and a 'metapopulation' SIRS model. Pineda-Krch et al. (2008) .
How to cite:
Robrecht Cannoodt (2007). GillespieSSA: Gillespie's Stochastic Simulation Algorithm (SSA). R package version 0.6.2, https://cran.r-project.org/web/packages/GillespieSSA. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.2-0 (2007-09-21 17:17), 0.3-1 (2007-10-04 11:08), 0.4-0 (2007-10-14 11:47), 0.5-0 (2007-10-20 09:05), 0.5-1 (2008-01-16 10:15), 0.5-2 (2008-01-19 10:00), 0.5-3 (2008-02-21 20:55), 0.5-4 (2012-01-15 12:32), 0.6.0 (2019-07-15 00:19), 0.6.1 (2019-07-26 19:40)
Other packages that cited GillespieSSA R package
View GillespieSSA citation profile
Other R packages that GillespieSSA depends, imports, suggests or enhances
Complete documentation for GillespieSSA
Functions, R codes and Examples using the GillespieSSA R package
Some associated functions: GillespieSSA-package . ssa.btl . ssa.d . ssa.etl . ssa . ssa.otl . ssa.plot . 
Some associated R codes: GillespieSSA-package.R . parse.propensity.functions.R . ssa.R . ssa.btl.R . ssa.d.R . ssa.etl.R . ssa.method.R . ssa.nutiling.R . ssa.otl.R . ssa.plot.R .  Full GillespieSSA package functions and examples
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