Other packages > Find by keyword >

GillespieSSA  

Gillespie's Stochastic Simulation Algorithm (SSA)
View on CRAN: Click here


Download and install GillespieSSA package within the R console
Install from CRAN:
install.packages("GillespieSSA")

Install from Github:
library("remotes")
install_github("cran/GillespieSSA")

Install by package version:
library("remotes")
install_version("GillespieSSA", "0.6.2")



Attach the package and use:
library("GillespieSSA")
Maintained by
Robrecht Cannoodt
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2007-09-21
Latest Update: 2022-03-10
Description:
Provides a simple to use, intuitive, and extensible interface to several stochastic simulation algorithms for generating simulated trajectories of finite population continuous-time model. Currently it implements Gillespie's exact stochastic simulation algorithm (Direct method) and several approximate methods (Explicit tau-leap, Binomial tau-leap, and Optimized tau-leap). The package also contains a library of template models that can be run as demo models and can easily be customized and extended. Currently the following models are included, 'Decaying-Dimerization' reaction set, linear chain system, logistic growth model, 'Lotka' predator-prey model, Rosenzweig-MacArthur predator-prey model, 'Kermack-McKendrick' SIR model, and a 'metapopulation' SIRS model. Pineda-Krch et al. (2008) .
How to cite:
Robrecht Cannoodt (2007). GillespieSSA: Gillespie's Stochastic Simulation Algorithm (SSA). R package version 0.6.2, https://cran.r-project.org/web/packages/GillespieSSA. Accessed 07 Jun. 2026.
Previous versions and publish date:
0.2-0 (2007-09-21 17:17), 0.3-1 (2007-10-04 11:08), 0.4-0 (2007-10-14 11:47), 0.5-0 (2007-10-20 09:05), 0.5-1 (2008-01-16 10:15), 0.5-2 (2008-01-19 10:00), 0.5-3 (2008-02-21 20:55), 0.5-4 (2012-01-15 12:32), 0.6.0 (2019-07-15 00:19), 0.6.1 (2019-07-26 19:40)
Other packages that cited GillespieSSA R package
View GillespieSSA citation profile
Other R packages that GillespieSSA depends, imports, suggests or enhances
Complete documentation for GillespieSSA
Functions, R codes and Examples using the GillespieSSA R package
Some associated functions: GillespieSSA-package . ssa.btl . ssa.d . ssa.etl . ssa . ssa.otl . ssa.plot . 
Some associated R codes: GillespieSSA-package.R . parse.propensity.functions.R . ssa.R . ssa.btl.R . ssa.d.R . ssa.etl.R . ssa.method.R . ssa.nutiling.R . ssa.otl.R . ssa.plot.R .  Full GillespieSSA package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

gRain  
Bayesian Networks
Probability propagation in graphical independence networks, also known as Bayesian networks or prob ...
Download / Learn more Package Citations See dependency  
roxygen2  
In-Line Documentation for R
Generate your Rd documentation, 'NAMESPACE' file, and collation field using specially formatted com ...
Download / Learn more Package Citations See dependency  
embryogrowth  
Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Tools to analyze the embryo growth and the sexualisation thermal reaction norms. See ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
cesR  
Access the Canadian Election Study Datasets
Makes accessing and loading the Canadian Election Study (, ...
Download / Learn more Package Citations See dependency  
curtailment  
Finds Binary Outcome Designs Using Stochastic Curtailment
Finds single- and two-arm designs using stochastic curtailment, as described by Law et al. (2022) ...
Download / Learn more Package Citations See dependency  

27,372

R Packages

233,548

Dependencies

72,820

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA