Other packages > Find by keyword >

GeoTcgaData  

Processing various types of data on GEO and TCGA
View on CRAN: Click here


Download and install GeoTcgaData package within the R console
Install from CRAN:
install.packages("GeoTcgaData")

Install from Github:
library("remotes")
install_github("cran/GeoTcgaData")

Install by package version:
library("remotes")
install_version("GeoTcgaData", "1.1.1.992")



Attach the package and use:
library("GeoTcgaData")
Maintained by
Erqiang Hu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-09-16
Latest Update: 2022-11-19
Description:
Gene Expression OmnibusGEO and The Cancer Genome Atlas TCGAprovide us with a wealth of data such as RNA-seq DNA Methylation SNPand Copy number variation data. Its easy to download data from TCGA using thegdc tool but processing these data into a format suitable for bioinformaticsanalysis requires more work. This R package was developed to handle these data.
How to cite:
Erqiang Hu (2019). GeoTcgaData: Processing various types of data on GEO and TCGA. R package version 1.1.1.992, https://cran.r-project.org/web/packages/GeoTcgaData. Accessed 28 Mar. 2025.
Previous versions and publish date:
0.1.0 (2019-09-16 11:30), 0.2.0 (2019-09-23 06:10), 0.2.2 (2020-01-07 12:00), 0.2.3 (2020-02-23 01:10), 0.2.4 (2020-06-09 14:20), 0.2.5 (2021-06-06 09:10), 1.0.0.1 (2021-07-26 20:10), 1.0.0 (2021-07-16 10:50), 1.0.1 (2021-08-02 01:10), 1.0.2 (2021-10-24 11:20), 1.1.0 (2022-08-06 11:10), 1.1.1.992 (2022-09-23 04:20), 1.1.1 (2022-08-12 10:20)
Other packages that cited GeoTcgaData R package
View GeoTcgaData citation profile
Other R packages that GeoTcgaData depends, imports, suggests or enhances
Functions, R codes and Examples using the GeoTcgaData R package
Full GeoTcgaData package functions and examples
Downloads during the last 30 days
02/2602/2703/0403/0503/0703/0803/1003/1103/1303/1503/1803/21Downloads for GeoTcgaData051015202530TrendBars

Today's Hot Picks in Authors and Packages

hts  
Hierarchical and Grouped Time Series
Provides methods for analysing and forecasting hierarchical and grouped time series. The available ...
Download / Learn more Package Citations See dependency  
rsvd  
Randomized Singular Value Decomposition
Low-rank matrix decompositions are fundamental tools and widely used for data analysis, dimension r ...
Download / Learn more Package Citations See dependency  
transfR  
Transfer of Hydrograph from Gauged to Ungauged Catchments
A geomorphology-based hydrological modelling for transferring streamflow measurements from gauged to ...
Download / Learn more Package Citations See dependency  
gripp  
General Inverse Problem Platform
Set of functions designed to solve inverse problems. The direct problem is used to calculate a cost ...
Download / Learn more Package Citations See dependency  
pleiotest  
Fast Sequential Pleiotropy Test
It performs a fast multi-trait genome-wide association analysis based on seemingly unrelated regress ...
Download / Learn more Package Citations See dependency  
FuzzyResampling  
Resampling Methods for Triangular and Trapezoidal Fuzzy Numbers
The classical (i.e. Efron's, see Efron and Tibshirani (1994, ISBN:978-0412042317) "An Introduction ...
Download / Learn more Package Citations See dependency  

23,842

R Packages

207,311

Dependencies

64,420

Author Associations

23,781

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA