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GenomicTools.fileHandler
View on CRAN: Click
here
Download and install GenomicTools.fileHandler package within the R console
Install from CRAN:
install.packages("GenomicTools.fileHandler")
Install from Github:
library("remotes")
install_github("cran/GenomicTools.fileHandler") Install by package version:
library("remotes")
install_version("GenomicTools.fileHandler", "0.1.5.9") Attach the package and use:
library("GenomicTools.fileHandler")
Maintained by
Daniel Fischer
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-08-16
Latest Update: 2020-03-05
Description:
A collection of I/O tools for handling the most commonly used genomic datafiles, like fasta/-q, bed, gff, gtf, ped/map and vcf.
How to cite:
Daniel Fischer (2018). GenomicTools.fileHandler: File Handlers for Genomic Data Analysis. R package version 0.1.5.9, https://cran.r-project.org/web/packages/GenomicTools.fileHandler. Accessed 18 Sep. 2026.
Previous versions and publish date:
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Complete documentation for GenomicTools.fileHandler
Functions, R codes and Examples using
the GenomicTools.fileHandler R package
Some associated functions: GenomicTools.fileHandler-package . example.bed . example.fasta . example.fastq . example.gff . example.gtf . example.ped . example.vcf . example2.gtf.gz . exportBed . exportFA . importBed . importBlastTab . importFA . importFQ . importFeatureCounts . importGFF . importGFF3 . importGTF . importPED . importSTARLog . importVCF . importXML . plotTotalReads . plotUniquelyMappedReads . prereadGTF . print.bed . print.fa . print.featureCounts . print.fq . print.gtf . print.pedMap . print.vcf . summary.STARLog . summary.bed . summary.fa . summary.featureCounts . summary.fq . summary.gtf .
Some associated R codes: GenomicTools.fileHandler.R . S3print.R . S3summary.R . S3summary.STARLog.R . aaa.R . exampleFiles.R . exportBed.R . exportFA.R . importBed.R . importBlastTab.R . importFA.R . importFQ.R . importFeatureCounts.R . importGFF.R . importGFF3.R . importGTF.R . importPED.R . importSTARLog.R . importVCF.R . importXML.R . plotTotalReads.R . plotUniquelyMappedReads.R . prereadGTF.R . Full GenomicTools.fileHandler package functions and examples
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