Other packages > Find by keyword >

GenomicSig  

Computation of Genomic Signatures
View on CRAN: Click here


Download and install GenomicSig package within the R console
Install from CRAN:
install.packages("GenomicSig")

Install from Github:
library("remotes")
install_github("cran/GenomicSig")

Install by package version:
library("remotes")
install_version("GenomicSig", "0.1.0")



Attach the package and use:
library("GenomicSig")
Maintained by
Anu Sharma
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-09-11
Latest Update: 2024-09-11
Description:
Genomic signatures represent unique features within a species' DNA, enabling the differentiation of species and offering broad applications across various fields. This package provides essential tools for calculating these specific signatures, streamlining the process for researchers and offering a comprehensive and time-saving solution for genomic analysis.The amino acid contents are identified based on the work published by Sandberg et al. (2003) <doi:10.1016/s0378-1119(03)00581-x> and Xiao et al. (2015) <doi:10.1093/bioinformatics/btv042>. The Average Mutual Information Profiles (AMIP) values are calculated based on the work of Bauer et al. (2008) <doi:10.1186/1471-2105-9-48>. The Chaos Game Representation (CGR) plot visualization was done based on the work of Deschavanne et al. (1999) <doi:10.1093/oxfordjournals.molbev.a026048> and Jeffrey et al. (1990) <doi:10.1093/nar/18.8.2163>. The GC content is calculated based on the work published by Nakabachi et al. (2006) <doi:10.1126/science.1134196> and Barbu et al. (1956) <https://pubmed.ncbi.nlm.nih.gov/13363015>. The Oligonucleotide Frequency Derived Error Gradient (OFDEG) values are computed based on the work published by Saeed et al. (2009) <doi:10.1186/1471-2164-10-S3-S10>. The Relative Synonymous Codon Usage (RSCU) values are calculated based on the work published by Elek (2018) <https://urn.nsk.hr/urn:nbn:hr:217:686131>.
How to cite:
Anu Sharma (2024). GenomicSig: Computation of Genomic Signatures. R package version 0.1.0, https://cran.r-project.org/web/packages/GenomicSig. Accessed 27 Aug. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited GenomicSig R package
View GenomicSig citation profile
Other R packages that GenomicSig depends, imports, suggests or enhances
Complete documentation for GenomicSig
Functions, R codes and Examples using the GenomicSig R package
Full GenomicSig package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

ROI.plugin.qpoases  
'qpOASES' Plugin for the 'R' Optimization Infrastructure
Enhances the 'R' Optimization Infrastructure ('ROI') package with the quadratic solver 'qpOASES'. M ...
Download / Learn more Package Citations See dependency  
Bodi  
Boosting Diversity in Regression Ensembles
A gradient boosting-based algorithm by incorporating a diversity term to guide the gradient boosting ...
Download / Learn more Package Citations See dependency  
robustX  
'eXtra' / 'eXperimental' Functionality for Robust Statistics
Robustness -- 'eXperimental', 'eXtraneous', or 'eXtraordinary' Functionality for Robust Statistics. ...
Download / Learn more Package Citations See dependency  
BetterReg  
Better Statistics for OLS and Binomial Logistic Regression
Provides squared semi partial correlations, tolerance, Mahalanobis, Likelihood Ratio Chi Square, and ...
Download / Learn more Package Citations See dependency  
risksetROC  
Riskset ROC Curve Estimation from Censored Survival Data
Compute time-dependent Incident/dynamic accuracy measures (ROC curve, AUC, integrated AUC )from cen ...
Download / Learn more Package Citations See dependency  
IntervalQuestionStat  
Tools to Deal with Interval-Valued Responses in Questionnaires
A user-friendly toolbox for doing the statistical analysis of interval-valued responses in question ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA