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GenomeAdmixR  

Simulate Admixture of Genomes
View on CRAN: Click here


Download and install GenomeAdmixR package within the R console
Install from CRAN:
install.packages("GenomeAdmixR")

Install from Github:
library("remotes")
install_github("cran/GenomeAdmixR")

Install by package version:
library("remotes")
install_version("GenomeAdmixR", "2.1.7")



Attach the package and use:
library("GenomeAdmixR")
Maintained by
Thijs Janzen
[Scholar Profile | Author Map]
First Published: 2021-01-21
Latest Update: 2022-03-01
Description:
Individual-based simulations forward in time, simulating how patterns in ancestry along the genome change after admixture. Full description can be found in Janzen (2021) .
How to cite:
Thijs Janzen (2021). GenomeAdmixR: Simulate Admixture of Genomes. R package version 2.1.7, https://cran.r-project.org/web/packages/GenomeAdmixR. Accessed 09 May. 2025.
Previous versions and publish date:
1.1.2 (2021-01-21 10:10), 1.1.3 (2021-01-25 00:10), 2.0.2 (2021-02-26 15:40), 2.1.1 (2021-03-30 16:50), 2.1.2 (2022-01-15 00:22)
Other packages that cited GenomeAdmixR R package
View GenomeAdmixR citation profile
Other R packages that GenomeAdmixR depends, imports, suggests or enhances
Complete documentation for GenomeAdmixR
Functions, R codes and Examples using the GenomeAdmixR R package
Some associated functions: GenomeAdmixR-package . ancestry_module . calculate_allele_frequencies . calculate_average_ld . calculate_dist_junctions . calculate_fst . calculate_heterozygosity . calculate_ld . calculate_marker_frequency . combine_input_data . create_artificial_genomeadmixr_data . create_iso_female . dgrp2.3R.5k.data . iso_female_ancestry . iso_female_sequence . load_population . migration_settings . plink_to_genomeadmixr_data . plot.individual . plot_chromosome . plot_difference_frequencies . plot_dist_junctions . plot_frequencies . plot_joyplot_frequencies . plot_over_time . plot_start_end . print.genomeadmixr_data . print.individual . print.population . read_input_data . save_population . sequence_module . simulate_admixture . simulate_ancestry . simulate_ancestry_migration . simulate_sequence . simulate_sequence_migration . simulation_data_to_genomeadmixr_data . vcfR_to_genomeadmixr_data . write_as_plink . 
Some associated R codes: RcppExports.R . ancestry_module.R . calculate_allele_frequencies.R . calculate_frequencies.R . calculate_fst.R . calculate_heterozygosity.R . calculate_ld.R . calculate_marker_frequency.R . create_input_data.R . create_iso_female.R . create_iso_female_data.R . data.R . joyplot_frequencies.R . junctions.R . migration_settings.R . plot_chromosome.R . plot_difference_frequencies.R . plot_frequencies.R . plot_over_time.R . plot_start_end.R . save_load.R . sequence_module.R . simulate_admixture.R . simulate_ancestry.R . simulate_ancestry_migration.R . simulate_ancestry_until.R . simulate_sequence.R . simulate_sequence_migration.R . simulate_sequence_until.R . utilities.R .  Full GenomeAdmixR package functions and examples
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