Other packages > Find by keyword >

GenomeAdmixR  

Simulate Admixture of Genomes
View on CRAN: Click here


Download and install GenomeAdmixR package within the R console
Install from CRAN:
install.packages("GenomeAdmixR")

Install from Github:
library("remotes")
install_github("cran/GenomeAdmixR")

Install by package version:
library("remotes")
install_version("GenomeAdmixR", "2.1.7")



Attach the package and use:
library("GenomeAdmixR")
Maintained by
Thijs Janzen
[Scholar Profile | Author Map]
First Published: 2021-01-21
Latest Update: 2022-03-01
Description:
Individual-based simulations forward in time, simulating how patterns in ancestry along the genome change after admixture. Full description can be found in Janzen (2021) .
How to cite:
Thijs Janzen (2021). GenomeAdmixR: Simulate Admixture of Genomes. R package version 2.1.7, https://cran.r-project.org/web/packages/GenomeAdmixR. Accessed 01 Apr. 2025.
Previous versions and publish date:
1.1.2 (2021-01-21 10:10), 1.1.3 (2021-01-25 00:10), 2.0.2 (2021-02-26 15:40), 2.1.1 (2021-03-30 16:50), 2.1.2 (2022-01-15 00:22)
Other packages that cited GenomeAdmixR R package
View GenomeAdmixR citation profile
Other R packages that GenomeAdmixR depends, imports, suggests or enhances
Complete documentation for GenomeAdmixR
Functions, R codes and Examples using the GenomeAdmixR R package
Some associated functions: GenomeAdmixR-package . ancestry_module . calculate_allele_frequencies . calculate_average_ld . calculate_dist_junctions . calculate_fst . calculate_heterozygosity . calculate_ld . calculate_marker_frequency . combine_input_data . create_artificial_genomeadmixr_data . create_iso_female . dgrp2.3R.5k.data . iso_female_ancestry . iso_female_sequence . load_population . migration_settings . plink_to_genomeadmixr_data . plot.individual . plot_chromosome . plot_difference_frequencies . plot_dist_junctions . plot_frequencies . plot_joyplot_frequencies . plot_over_time . plot_start_end . print.genomeadmixr_data . print.individual . print.population . read_input_data . save_population . sequence_module . simulate_admixture . simulate_ancestry . simulate_ancestry_migration . simulate_sequence . simulate_sequence_migration . simulation_data_to_genomeadmixr_data . vcfR_to_genomeadmixr_data . write_as_plink . 
Some associated R codes: RcppExports.R . ancestry_module.R . calculate_allele_frequencies.R . calculate_frequencies.R . calculate_fst.R . calculate_heterozygosity.R . calculate_ld.R . calculate_marker_frequency.R . create_input_data.R . create_iso_female.R . create_iso_female_data.R . data.R . joyplot_frequencies.R . junctions.R . migration_settings.R . plot_chromosome.R . plot_difference_frequencies.R . plot_frequencies.R . plot_over_time.R . plot_start_end.R . save_load.R . sequence_module.R . simulate_admixture.R . simulate_ancestry.R . simulate_ancestry_migration.R . simulate_ancestry_until.R . simulate_sequence.R . simulate_sequence_migration.R . simulate_sequence_until.R . utilities.R .  Full GenomeAdmixR package functions and examples
Downloads during the last 30 days
03/0203/0303/0403/0503/0603/0703/0803/0903/1003/1103/1203/1303/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/2803/2903/3003/31Downloads for GenomeAdmixR024681012141618TrendBars

Today's Hot Picks in Authors and Packages

shinyBS  
Twitter Bootstrap Components for Shiny
Adds additional Twitter Bootstrap components to Shiny. ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
samplesize  
Sample Size Calculation for Various t-Tests and Wilcoxon-Test
Computes sample size for Student's t-test and for the Wilcoxon-Mann-Whitney test for categorical dat ...
Download / Learn more Package Citations See dependency  
eSIR  
Extended State-Space SIR Models
An implementation of extended state-space SIR models developed by Song Lab at UM school of Public H ...
Download / Learn more Package Citations See dependency  
gasmodel  
Generalized Autoregressive Score Models
Estimation, forecasting, and simulation of generalized autoregressive score (GAS) models of Creal, ...
Download / Learn more Package Citations See dependency  
simplevis  
Wrappers to Simplify Beautiful "ggplot2" and "leaflet" Visualisation
Wrapper functions around the amazing 'leaflet' package that aims to simplify 'leaflet' visualisatio ...
Download / Learn more Package Citations See dependency  

23,842

R Packages

207,311

Dependencies

64,420

Author Associations

23,781

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA