Other packages > Find by keyword >

GenoPop  

Genotype Imputation and Population Genomics Efficiently from Variant Call Formatted (VCF) Files
View on CRAN: Click here


Download and install GenoPop package within the R console
Install from CRAN:
install.packages("GenoPop")

Install from Github:
library("remotes")
install_github("cran/GenoPop")

Install by package version:
library("remotes")
install_version("GenoPop", "0.9.3")



Attach the package and use:
library("GenoPop")
Maintained by
Marie Gurke
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-09-11
Latest Update: 2024-09-11
Description:
Tools for efficient processing of large, whole genome genotype data sets in variant call format (VCF). It includes several functions to calculate commonly used population genomic metrics and a method for reference panel free genotype imputation, which is described in the preprint Gurke & Mayer (2024) <doi:10.22541/au.172515591.10119928/v1>.
How to cite:
Marie Gurke (2024). GenoPop: Genotype Imputation and Population Genomics Efficiently from Variant Call Formatted (VCF) Files. R package version 0.9.3, https://cran.r-project.org/web/packages/GenoPop. Accessed 28 Sep. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited GenoPop R package
View GenoPop citation profile
Other R packages that GenoPop depends, imports, suggests or enhances
Complete documentation for GenoPop
Functions, R codes and Examples using the GenoPop R package
Full GenoPop package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

plm  
Linear Models for Panel Data
A set of estimators for models and (robust) covariance matrices, and tests for panel data econometr ...
Download / Learn more Package Citations See dependency  
mhtboot  
Multiple Hypothesis Test Based on Distribution of p Values
A framework for multiple hypothesis testing based on distribution of p values. It is well known tha ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
baseballr  
Acquiring and Analyzing Baseball Data
Provides numerous utilities for acquiring and analyzing baseball data from online sources such as ' ...
Download / Learn more Package Citations See dependency  
semTable  
Structural Equation Modeling Tables
For confirmatory factor analysis ('CFA') and structural equation models ('SEM') estimated with the ...
Download / Learn more Package Citations See dependency  
glogis  
Fitting and Testing Generalized Logistic Distributions
Tools for the generalized logistic distribution (Type I, also known as skew-logistic distribution), ...
Download / Learn more Package Citations See dependency  

22,869

R Packages

195,887

Dependencies

63,882

Author Associations

22,870

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA