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GeneralizedUmatrix
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Download and install GeneralizedUmatrix package within the R console
Install from CRAN:
install.packages("GeneralizedUmatrix")
Install from Github:
library("remotes")
install_github("cran/GeneralizedUmatrix")
Install by package version:
library("remotes")
install_version("GeneralizedUmatrix", "1.2.6")
Attach the package and use:
library("GeneralizedUmatrix")
Maintained by
Michael Thrun
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-05-18
Latest Update: 2023-05-30
Description:
Projections are common dimensionality reduction methods, which represent high-dimensional data in a two-dimensional space. However, when restricting the output space to two dimensions, which results in a two dimensional scatter plot (projection) of the data, low dimensional similarities do not represent high dimensional distances coercively [Thrun, 2018] . This could lead to a misleading interpretation of the underlying structures [Thrun, 2018]. By means of the 3D topographic map the generalized Umatrix is able to depict errors of these two-dimensional scatter plots. The package is derived from the book of Thrun, M.C.: "Projection Based Clustering through Self-Organization and Swarm Intelligence" (2018) and the main algorithm called simplified self-organizing map for dimensionality reduction methods is published in .
How to cite:
Michael Thrun (2017). GeneralizedUmatrix: Credible Visualization for Two-Dimensional Projections of Data. R package version 1.2.6, https://cran.r-project.org/web/packages/GeneralizedUmatrix
Previous versions and publish date:
0.9.4 (2017-05-18 11:23), 0.9.5 (2017-08-20 16:21), 1.0.0 (2018-01-31 19:13), 1.1.2 (2018-07-03 17:00), 1.1.4 (2019-01-27 14:30), 1.1.5 (2019-02-03 13:54), 1.1.6 (2019-11-20 22:30), 1.1.8 (2020-02-17 16:40), 1.1.9 (2020-03-23 15:50), 1.2.0 (2020-08-24 15:00), 1.2.1 (2020-10-25 11:40), 1.2.2 (2021-01-12 20:30), 1.2.4 (2022-05-25 17:30), 1.2.5 (2022-11-28 13:40)
Other packages that cited GeneralizedUmatrix R package
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Other R packages that GeneralizedUmatrix depends,
imports, suggests or enhances
Functions, R codes and Examples using
the GeneralizedUmatrix R package
Some associated functions: CalcUstarmatrix . Chainlink . DefaultColorSequence . Delta3DWeightsC . EsomNeuronsAsList . ExtendToroidalUmatrix . GeneralizedUmatrix-package . GeneralizedUmatrix . GeneratePmatrix . ListAsEsomNeurons . LowLand . NormalizeUmatrix . ReduceToLowLand . TopviewTopographicMap . Uheights4Data . UmatrixColormap . UniqueBestMatchingUnits . XYcoords2LinesColumns . addRowWiseC . plotTopographicMap . sESOM4BMUs . setdiffMatrix . trainstepC . upscaleUmatrix .
Some associated R codes: CalcUstarmatrix.R . EsomNeuronsAsList.R . ExtendToroidalUmatrix.R . GeneralizedUmatrix.R . GeneratePmatrix.R . ListAsEsomNeurons.R . LowLand.R . NormalizeUmatrix.R . RcppExports.R . ReduceToLowLand.R . TopviewTopographicMap.R . Uheights4Data.R . UniqueBestMatchingUnits.R . XYcoords2LinesColumns.R . plotTopographicMap.R . sESOM4BMUs.R . setdiffMatrix.R . tileGUM.R . upscaleUmatrix.R . Full GeneralizedUmatrix package functions and examples
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