Other packages > Find by keyword >

GeneSelectR  

'GeneSelectR' - Comprehensive Feature Selection Workflow for Bulk RNAseq Datasets
View on CRAN: Click here


Download and install GeneSelectR package within the R console
Install from CRAN:
install.packages("GeneSelectR")

Install from Github:
library("remotes")
install_github("cran/GeneSelectR")

Install by package version:
library("remotes")
install_version("GeneSelectR", "1.0.1")



Attach the package and use:
library("GeneSelectR")
Maintained by
Damir Zhakparov
[Scholar Profile | Author Map]
First Published: 2023-12-13
Latest Update: 2024-02-03
Description:
The workflow is a versatile R package designed for comprehensive feature selection in bulk RNAseq datasets. Its key innovation lies in the seamless integration of the 'Python' 'scikit-learn' () machine learning framework with R-based bioinformatics tools. 'GeneSelectR' performs robust Machine Learning-driven (ML) feature selection while leveraging 'Gene Ontology' (GO) enrichment analysis as described by Thomas PD et al. (2022) , using 'clusterProfiler' (Wu et al., 2021) and semantic similarity analysis powered by 'simplifyEnrichment' (Gu, Huebschmann, 2021) . This combination of methodologies optimizes computational and biological insights for analyzing complex RNAseq datasets.
How to cite:
Damir Zhakparov (2023). GeneSelectR: 'GeneSelectR' - Comprehensive Feature Selection Workflow for Bulk RNAseq Datasets. R package version 1.0.1, https://cran.r-project.org/web/packages/GeneSelectR. Accessed 17 Feb. 2025.
Previous versions and publish date:
1.0.0 (2023-12-13 13:30)
Other packages that cited GeneSelectR R package
View GeneSelectR citation profile
Other R packages that GeneSelectR depends, imports, suggests or enhances
Complete documentation for GeneSelectR
Functions, R codes and Examples using the GeneSelectR R package
Full GeneSelectR package functions and examples
Downloads during the last 30 days
01/1801/1901/2001/2101/2201/2301/2401/2501/2601/2701/2801/2901/3001/3102/0102/0202/0302/0402/0502/0602/0702/0802/0902/1002/1102/1202/1302/1402/1502/16Downloads for GeneSelectR02468101214TrendBars
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

officedown  
Enhanced 'R Markdown' Format for 'Word' and 'PowerPoint'
Allows production of 'Microsoft' corporate documents from 'R Markdown' by reusing formatting define ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
mcmcse  
Monte Carlo Standard Errors for MCMC
Provides tools for computing Monte Carlo standard errors (MCSE) in Markov chain Monte Carlo (MCMC) ...
Download / Learn more Package Citations See dependency  
vrtest  
Variance Ratio Tests and Other Tests for Martingale Difference Hypothesis
Acollection of statistical tests for martingale difference hypothesis, including automatic portmante ...
Download / Learn more Package Citations See dependency  
RecordTest  
Inference Tools in Time Series Based on Record Statistics
Statistical tools based on the probabilistic properties of the record occurrence in a sequence of i ...
Download / Learn more Package Citations See dependency  

23,712

R Packages

204,958

Dependencies

64,332

Author Associations

23,631

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA