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GenWin  

Spline Based Window Boundaries for Genomic Analyses
View on CRAN: Click here


Download and install GenWin package within the R console
Install from CRAN:
install.packages("GenWin")

Install from Github:
library("remotes")
install_github("cran/GenWin")

Install by package version:
library("remotes")
install_version("GenWin", "1.0")



Attach the package and use:
library("GenWin")
Maintained by
Timothy M. Beissinger
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-09-26
Latest Update: 2022-11-25
Description:
Defines window or bin boundaries for the analysis of genomic data. Boundaries are based on the inflection points of a cubic smoothing spline fitted to the raw data. Along with defining boundaries, a technique to evaluate results obtained from unequally-sized windows is provided. Applications are particularly pertinent for, though not limited to, genome scans for selection based on variability between populations (e.g. using Wright's fixations index, Fst, which measures variability in subpopulations relative to the total population).
How to cite:
Timothy M. Beissinger (2014). GenWin: Spline Based Window Boundaries for Genomic Analyses. R package version 1.0, https://cran.r-project.org/web/packages/GenWin. Accessed 21 Nov. 2024.
Previous versions and publish date:
0.1 (2014-09-26 16:51)
Other packages that cited GenWin R package
View GenWin citation profile
Other R packages that GenWin depends, imports, suggests or enhances
Complete documentation for GenWin
Functions, R codes and Examples using the GenWin R package
Some associated functions: chr6 . splineAnalyze . 
Some associated R codes: chr6-data.R . spline_analyze.R .  Full GenWin package functions and examples
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