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GaMaBioMD
View on CRAN: Click
here
Download and install GaMaBioMD package within the R console
Install from CRAN:
install.packages("GaMaBioMD")
Install from Github:
library("remotes")
install_github("cran/GaMaBioMD")
Install by package version:
library("remotes")
install_version("GaMaBioMD", "0.2.0")
Attach the package and use:
library("GaMaBioMD")
Maintained by
Sandip Garai
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
First Published: 2024-01-12
Latest Update: 2024-01-12
Description:
The full form is Garai and Mantri Biological Material Diversity. It is an R package designed for the calculation of biological diversity using sequence data. It simplifies the process by requiring only sample IDs and accession numbers. Whether you're analyzing genetic or microbial diversity, It provides efficient tools for diversity analysis. Serially one should go for the functions as presented here expand_accession_ranges(), get_sequence_information(), preprocess_for_alignment(), write_fasta(), SampleID_vs_NumSequences(), data_sampling(), alignment_info(), compute_average_similarity_matrix(), generate_heatmaps(), clustering_average_similarity(), clustering_percent_similarity(), bubble_plot_count(), bubble_plot_percentage(), tree_average_similarity(), tree_percent_similarity(). Till date there are total 15 functions. More details can be found in Faith (1992) .
How to cite:
Sandip Garai (2024). GaMaBioMD: Diversity Analysis for Sequence Data. R package version 0.2.0, https://cran.r-project.org/web/packages/GaMaBioMD. Accessed 27 Feb. 2025.
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