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GWsignif  

Estimating Genome-Wide Significance for Whole Genome Sequencing Studies, Either Single SNP Tests or Region-Based Tests
View on CRAN: Click here


Download and install GWsignif package within the R console
Install from CRAN:
install.packages("GWsignif")

Install from Github:
library("remotes")
install_github("cran/GWsignif")

Install by package version:
library("remotes")
install_version("GWsignif", "1.2")



Attach the package and use:
library("GWsignif")
Maintained by
ChangJiang Xu
[Scholar Profile | Author Map]
First Published: 2014-01-15
Latest Update: 2016-09-12
Description:
The correlations and linkage disequilibrium between tests can vary as a function of minor allele frequency thresholds used to filter variants, and also varies with different choices of test statistic for region-based tests. Appropriate genome-wide significance thresholds can be estimated empirically through permutation on only a small proportion of the whole genome.
How to cite:
ChangJiang Xu (2014). GWsignif: Estimating Genome-Wide Significance for Whole Genome Sequencing Studies, Either Single SNP Tests or Region-Based Tests. R package version 1.2, https://cran.r-project.org/web/packages/GWsignif. Accessed 14 May. 2025.
Previous versions and publish date:
1.0 (2014-01-15 09:11), 1.1 (2016-06-20 20:21)
Other packages that cited GWsignif R package
View GWsignif citation profile
Other R packages that GWsignif depends, imports, suggests or enhances
Complete documentation for GWsignif
Functions, R codes and Examples using the GWsignif R package
Some associated functions: GWsignif-package . GWsignif . 
Some associated R codes: GWsignif.R .  Full GWsignif package functions and examples
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