Other packages > Find by keyword >

GUniFrac  

Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis
View on CRAN: Click here


Download and install GUniFrac package within the R console
Install from CRAN:
install.packages("GUniFrac")

Install from Github:
library("remotes")
install_github("cran/GUniFrac")

Install by package version:
library("remotes")
install_version("GUniFrac", "1.9")



Attach the package and use:
library("GUniFrac")
Maintained by
Jun Chen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-04-28
Latest Update: 2025-09-03
Description:
A suite of methods for powerful and robust microbiome data analysis including data normalization, data simulation, community-level association testing and differential abundance analysis. It implements generalized UniFrac distances, Geometric Mean of Pairwise Ratios (GMPR) normalization, semiparametric data simulator, distance-based statistical methods, and feature-based statistical methods. The distance-based statistical methods include three extensions of PERMANOVA: (1) PERMANOVA using the Freedman-Lane permutation scheme, (2) PERMANOVA omnibus test using multiple matrices, and (3) analytical approach to approximating PERMANOVA p-value. Feature-based statistical methods include linear model-based methods for differential abundance analysis of zero-inflated high-dimensional compositional data.
How to cite:
Jun Chen (2012). GUniFrac: Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis. R package version 1.9, https://cran.r-project.org/web/packages/GUniFrac. Accessed 23 Jul. 2026.
Previous versions and publish date:
1.0 (2012-04-28 18:47), 1.1 (2018-02-13 00:20), 1.2 (2021-05-03 16:20), 1.3 (2021-08-18 23:50), 1.4 (2021-11-10 07:20), 1.5 (2022-04-06 00:42), 1.6 (2022-05-17 23:50), 1.7 (2022-10-23 23:27), 1.8 (2023-09-14 02:02), (2026-07-09 08:05)
Other packages that cited GUniFrac R package
View GUniFrac citation profile
Other R packages that GUniFrac depends, imports, suggests or enhances
Complete documentation for GUniFrac
Functions, R codes and Examples using the GUniFrac R package
Some associated functions: GMPR . GUniFrac . PermanovaG . PermanovaG2 . Rarefy . SimulateMSeq . SimulateMSeqC . ZicoSeq . ZicoSeq.plot . adonis3 . dICC.SE.asympt . dICC.SE.bt . dICC . dmanova . stool.otu.tab . throat.meta . throat.otu.tab . throat.tree . vaginal.otu.tab . 
Some associated R codes: GMPR.R . GUniFrac.R . RcppExports.R . SimMSeq.R . ZicoSeq.R . dICC.R .  Full GUniFrac package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

fitscape  
Classes for Fitness Landscapes and Seascapes
Convenient classes to model fitness landscapes and fitness seascapes. A low-level package with whic ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
MixSIAR  
Bayesian Mixing Models in R
Creates and runs Bayesian mixing models to analyze biological tracer data (i.e. stable isotopes, fa ...
Download / Learn more Package Citations See dependency  
ODS  
Statistical Methods for Outcome-Dependent Sampling Designs
Outcome-dependent sampling (ODS) schemes are cost-effective ways to enhance study efficiency. In OD ...
Download / Learn more Package Citations See dependency  
gfcanalysis  
Tools for Working with Hansen et al. Global Forest Change Dataset
Supports analyses using the Global Forest Change dataset released by Hansen et al. gfcanalysis was ...
Download / Learn more Package Citations See dependency  

27,889

R Packages

239,283

Dependencies

74,019

Author Associations

27,890

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA