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GMAC  

Genomic Mediation Analysis with Adaptive Confounding Adjustment
View on CRAN: Click here


Download and install GMAC package within the R console
Install from CRAN:
install.packages("GMAC")

Install from Github:
library("remotes")
install_github("cran/GMAC")

Install by package version:
library("remotes")
install_version("GMAC", "3.1")



Attach the package and use:
library("GMAC")
Maintained by
Jiebiao Wang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-04-09
Latest Update: 2022-03-17
Description:
Performs genomic mediation analysis with adaptive confounding adjustment (GMAC) proposed by Yang et al. (2017) . It implements large scale mediation analysis and adaptively selects potential confounding variables to adjust for each mediation test from a pool of candidate confounders. The package is tailored for but not limited to genomic mediation analysis (e.g., cis-gene mediating trans-gene regulation pattern where an eQTL, its cis-linking gene transcript, and its trans-gene transcript play the roles as treatment, mediator and the outcome, respectively), restricting to scenarios with the presence of cis-association (i.e., treatment-mediator association) and random eQTL (i.e., treatment).
How to cite:
Jiebiao Wang (2017). GMAC: Genomic Mediation Analysis with Adaptive Confounding Adjustment. R package version 3.1, https://cran.r-project.org/web/packages/GMAC
Previous versions and publish date:
1.0 (2017-04-09 16:18), 2.0 (2017-10-31 23:54), 3.0 (2017-12-15 18:45)
Other packages that cited GMAC R package
View GMAC citation profile
Other R packages that GMAC depends, imports, suggests or enhances
Functions, R codes and Examples using the GMAC R package
Some associated functions: dat . gmac . 
Some associated R codes: GMAC.R . data.R .  Full GMAC package functions and examples
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