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GARCOM
View on CRAN: Click
here
Download and install GARCOM package within the R console
Install from CRAN:
install.packages("GARCOM")
Install from Github:
library("remotes")
install_github("cran/GARCOM")
Install by package version:
library("remotes")
install_version("GARCOM", "1.2.2")
Attach the package and use:
library("GARCOM")
Maintained by
Sanjeev Sariya
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-10-16
Latest Update: 2022-12-23
Description:
Gene and Region Counting of Mutations (GARCOM) package computes mutation (or alleles) counts per gene per individuals based on gene annotation or genomic base pair boundaries. It comes with features to accept data formats in plink(.raw) and VCF. It provides users flexibility to extract and filter individuals, mutations and genes of interest.
How to cite:
Sanjeev Sariya (2020). GARCOM: Gene and Region Counting of Mutations ("GARCOM"). R package version 1.2.2, https://cran.r-project.org/web/packages/GARCOM
Other packages that cited GARCOM R package
View GARCOM citation profile
Other R packages that GARCOM depends,
imports, suggests or enhances
Functions, R codes and Examples using
the GARCOM R package
Some associated functions: gene_annot_counts . gene_pos_counts . genecoord . recodedgen . sample_chr21_vcf . snpgene . snppos . vcf_counts_SNP_genecoords . vcf_counts_annot .
Some associated R codes: data.R . gene_annot_counts.R . gene_pos_counts.R . utils.R . vcf_counts_SNP_genecoords.R . vcf_counts_annot.R . zzz.R . Full GARCOM package functions and examples
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