Other packages > Find by keyword >

GARCOM  

Gene and Region Counting of Mutations ("GARCOM")
View on CRAN: Click here


Download and install GARCOM package within the R console
Install from CRAN:
install.packages("GARCOM")

Install from Github:
library("remotes")
install_github("cran/GARCOM")

Install by package version:
library("remotes")
install_version("GARCOM", "1.2.2")



Attach the package and use:
library("GARCOM")
Maintained by
Sanjeev Sariya
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-10-16
Latest Update: 2022-12-23
Description:
Gene and Region Counting of Mutations (GARCOM) package computes mutation (or alleles) counts per gene per individuals based on gene annotation or genomic base pair boundaries. It comes with features to accept data formats in plink(.raw) and VCF. It provides users flexibility to extract and filter individuals, mutations and genes of interest.
How to cite:
Sanjeev Sariya (2020). GARCOM: Gene and Region Counting of Mutations ("GARCOM"). R package version 1.2.2, https://cran.r-project.org/web/packages/GARCOM. Accessed 22 Sep. 2026.
Previous versions and publish date:
1.2.0 (2020-10-16 15:40), 1.2.1 (2022-12-14 09:10), (2026-07-09 08:04)
Other packages that cited GARCOM R package
View GARCOM citation profile
Other R packages that GARCOM depends, imports, suggests or enhances
Complete documentation for GARCOM
Functions, R codes and Examples using the GARCOM R package
Some associated functions: gene_annot_counts . gene_pos_counts . genecoord . recodedgen . sample_chr21_vcf . snpgene . snppos . vcf_counts_SNP_genecoords . vcf_counts_annot . 
Some associated R codes: data.R . gene_annot_counts.R . gene_pos_counts.R . utils.R . vcf_counts_SNP_genecoords.R . vcf_counts_annot.R . zzz.R .  Full GARCOM package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

Countr  
Flexible Univariate Count Models Based on Renewal Processes
Flexible univariate count models based on renewal processes. The models may include covariates and ...
Download / Learn more Package Citations See dependency  
heatmaply  
Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2'
Create interactive cluster 'heatmaps' that can be saved as a stand- alone HTML file, embedded in 'R ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
jointseg  
Joint Segmentation of Multivariate (Copy Number) Signals
Methods for fast segmentation of multivariate signals into piecewise constant profiles and for gene ...
Download / Learn more Package Citations See dependency  
cnum  
Chinese Numerals Processing
Chinese numerals processing in R, such as conversion between Chinese numerals and Arabic numerals a ...
Download / Learn more Package Citations See dependency  
spider  
Species Identity and Evolution in R
Analysis of species limits and DNA barcoding data. Included are functions for generating important s ...
Download / Learn more Package Citations See dependency  

28,720

R Packages

247,686

Dependencies

75,677

Author Associations

28,721

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA