Other packages > Find by keyword >

GARCOM  

Gene and Region Counting of Mutations ("GARCOM")
View on CRAN: Click here


Download and install GARCOM package within the R console
Install from CRAN:
install.packages("GARCOM")

Install from Github:
library("remotes")
install_github("cran/GARCOM")

Install by package version:
library("remotes")
install_version("GARCOM", "1.2.2")



Attach the package and use:
library("GARCOM")
Maintained by
Sanjeev Sariya
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-10-16
Latest Update: 2022-12-23
Description:
Gene and Region Counting of Mutations (GARCOM) package computes mutation (or alleles) counts per gene per individuals based on gene annotation or genomic base pair boundaries. It comes with features to accept data formats in plink(.raw) and VCF. It provides users flexibility to extract and filter individuals, mutations and genes of interest.
How to cite:
Sanjeev Sariya (2020). GARCOM: Gene and Region Counting of Mutations ("GARCOM"). R package version 1.2.2, https://cran.r-project.org/web/packages/GARCOM. Accessed 23 Jul. 2026.
Previous versions and publish date:
1.2.0 (2020-10-16 15:40), 1.2.1 (2022-12-14 09:10), (2026-07-09 08:04)
Other packages that cited GARCOM R package
View GARCOM citation profile
Other R packages that GARCOM depends, imports, suggests or enhances
Complete documentation for GARCOM
Functions, R codes and Examples using the GARCOM R package
Some associated functions: gene_annot_counts . gene_pos_counts . genecoord . recodedgen . sample_chr21_vcf . snpgene . snppos . vcf_counts_SNP_genecoords . vcf_counts_annot . 
Some associated R codes: data.R . gene_annot_counts.R . gene_pos_counts.R . utils.R . vcf_counts_SNP_genecoords.R . vcf_counts_annot.R . zzz.R .  Full GARCOM package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

ODS  
Statistical Methods for Outcome-Dependent Sampling Designs
Outcome-dependent sampling (ODS) schemes are cost-effective ways to enhance study efficiency. In OD ...
Download / Learn more Package Citations See dependency  
fitscape  
Classes for Fitness Landscapes and Seascapes
Convenient classes to model fitness landscapes and fitness seascapes. A low-level package with whic ...
Download / Learn more Package Citations See dependency  
MixSIAR  
Bayesian Mixing Models in R
Creates and runs Bayesian mixing models to analyze biological tracer data (i.e. stable isotopes, fa ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
gfcanalysis  
Tools for Working with Hansen et al. Global Forest Change Dataset
Supports analyses using the Global Forest Change dataset released by Hansen et al. gfcanalysis was ...
Download / Learn more Package Citations See dependency  

27,889

R Packages

239,283

Dependencies

74,019

Author Associations

27,890

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA