Other packages > Find by keyword >

GALLO  

Genomic Annotation in Livestock for Positional Candidate LOci
View on CRAN: Click here


Download and install GALLO package within the R console
Install from CRAN:
install.packages("GALLO")

Install from Github:
library("remotes")
install_github("cran/GALLO")

Install by package version:
library("remotes")
install_version("GALLO", "1.5")



Attach the package and use:
library("GALLO")
Maintained by
Pablo Fonseca
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-09-01
Latest Update: 2024-06-04
Description:
The accurate annotation of genes and Quantitative Trait Loci (QTLs) located within candidate markers and/or regions (haplotypes, windows, CNVs, etc) is a crucial step the most common genomic analyses performed in livestock, such as Genome-Wide Association Studies or transcriptomics. The Genomic Annotation in Livestock for positional candidate LOci (GALLO) is an R package designed to provide an intuitive and straightforward environment to annotate positional candidate genes and QTLs from high-throughput genetic studies in livestock. Moreover, GALLO allows the graphical visualization of gene and QTL annotation results, data comparison among different grouping factors (e.g., methods, breeds, tissues, statistical models, studies, etc.), and QTL enrichment in different livestock species including cattle, pigs, sheep, and chicken, among others.
How to cite:
Pablo Fonseca (2020). GALLO: Genomic Annotation in Livestock for Positional Candidate LOci. R package version 1.5, https://cran.r-project.org/web/packages/GALLO. Accessed 05 Aug. 2026.
Previous versions and publish date:
0.99.0 (2020-09-01 10:50), 1.0 (2020-10-08 14:30), 1.1 (2020-11-06 06:20), 1.2 (2021-04-08 18:20), 1.3 (2021-11-09 19:20), 1.4 (2024-03-13 10:40), 1.5 (2024-06-04 17:30), (2026-07-09 08:04)
Other packages that cited GALLO R package
View GALLO citation profile
Other R packages that GALLO depends, imports, suggests or enhances
Complete documentation for GALLO
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

noisyr  
Noise Quantification in High Throughput Sequencing Output
Quantifies and removes technical noise from high-throughput sequencing data. Two approaches are use ...
Download / Learn more Package Citations See dependency  
kernelPSI  
Post-Selection Inference for Nonlinear Variable Selection
Different post-selection inference strategies for kernelselection as described in kernelPSI a Post-S ...
Download / Learn more Package Citations See dependency  
dhReg  
Dynamic Harmonic Regression
Building and forecasting time series data with multiple seasonality using Dynamic Harmonic Regressio ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
dcov  
A Fast Implementation of Distance Covariance
Efficient methods for computing distance covariance and relevant statistics. See Sz ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA