Other packages > Find by keyword >

GALLO  

Genomic Annotation in Livestock for Positional Candidate LOci
View on CRAN: Click here


Download and install GALLO package within the R console
Install from CRAN:
install.packages("GALLO")

Install from Github:
library("remotes")
install_github("cran/GALLO")

Install by package version:
library("remotes")
install_version("GALLO", "2.0")



Attach the package and use:
library("GALLO")
Maintained by
Pablo Fonseca
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-09-01
Latest Update: 2024-06-04
Description:
The accurate annotation of genes and Quantitative Trait Loci (QTLs) located within candidate markers and/or regions (haplotypes, windows, CNVs, etc) is a crucial step the most common genomic analyses performed in livestock, such as Genome-Wide Association Studies or transcriptomics. The Genomic Annotation in Livestock for positional candidate LOci (GALLO) is an R package designed to provide an intuitive and straightforward environment to annotate positional candidate genes and QTLs from high-throughput genetic studies in livestock. Moreover, GALLO allows the graphical visualization of gene and QTL annotation results, data comparison among different grouping factors (e.g., methods, breeds, tissues, statistical models, studies, etc.), and QTL enrichment in different livestock species including cattle, pigs, sheep, and chicken, among others.
How to cite:
Pablo Fonseca (2020). GALLO: Genomic Annotation in Livestock for Positional Candidate LOci. R package version 2.0, https://cran.r-project.org/web/packages/GALLO. Accessed 27 Oct. 2026.
Previous versions and publish date:
0.99.0 (2020-09-01 10:50), 1.0 (2020-10-08 14:30), 1.1 (2020-11-06 06:20), 1.2 (2021-04-08 18:20), 1.3 (2021-11-09 19:20), 1.4 (2024-03-13 10:40), 1.5 (2024-06-04 17:30), (2026-07-09 08:04)
Other packages that cited GALLO R package
View GALLO citation profile
Other R packages that GALLO depends, imports, suggests or enhances
Complete documentation for GALLO
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

exams2learnr  
Interface for 'exams' Exercises in 'learnr' Tutorials
Automatic generation of quizzes or individual questions for 'learnr' tutorials based on 'R/exams' ex ...
Download / Learn more Package Citations See dependency  
spanish  
Translate Quantities from Strings to Integer and Back. Misc Functions on Spanish Data
Character vector to numerical translation in Euros from Spanish spelled monetary quantities. Reverse ...
Download / Learn more Package Citations See dependency  
SGB  
Simplicial Generalized Beta Regression
Main properties and regression procedures using a generalization of the Dirichlet distribution calle ...
Download / Learn more Package Citations See dependency  
usemodels  
Boilerplate Code for 'Tidymodels' Analyses
Code snippets to fit models using the tidymodels framework can be easily created for a given data se ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA