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GALLO
View on CRAN: Click
here
Download and install GALLO package within the R console
Install from CRAN:
install.packages("GALLO")
Install from Github:
library("remotes")
install_github("cran/GALLO") Install by package version:
library("remotes")
install_version("GALLO", "2.0") Attach the package and use:
library("GALLO")
Maintained by
Pablo Fonseca
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-09-01
Latest Update: 2024-06-04
Description:
The accurate annotation of genes and Quantitative Trait Loci (QTLs) located within candidate markers and/or regions (haplotypes, windows, CNVs, etc) is a crucial step the most common genomic analyses performed in livestock, such as Genome-Wide Association Studies or transcriptomics. The Genomic Annotation in Livestock for positional candidate LOci (GALLO) is an R package designed to provide an intuitive and straightforward environment to annotate positional candidate genes and QTLs from high-throughput genetic studies in livestock. Moreover, GALLO allows the graphical visualization of gene and QTL annotation results, data comparison among different grouping factors (e.g., methods, breeds, tissues, statistical models, studies, etc.), and QTL enrichment in different livestock species including cattle, pigs, sheep, and chicken, among others.
How to cite:
Pablo Fonseca (2020). GALLO: Genomic Annotation in Livestock for Positional Candidate LOci. R package version 2.0, https://cran.r-project.org/web/packages/GALLO. Accessed 05 Oct. 2026.
Previous versions and publish date:
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Other R packages that GALLO depends,
imports, suggests or enhances
Complete documentation for GALLO
Functions, R codes and Examples using
the GALLO R package
Some associated functions: Global . QTLenrich_plot . QTLmarkers . QTLwindows . autoStopCluster . find_genes_qtls_around_markers . gffQTLs . gtfGenes . import_gff_gtf . overlapping_among_groups . plot_overlapping . plot_qtl_info . qtl_enrich . relationship_plot . splitQTL_comment . sub_genes_markers . sub_genes_windows . sub_qtlEnrich_chrom . sub_qtlEnrich_geno . sub_qtl_markers . sub_qtl_windows .
Some associated R codes: Global.R . QTLenrich_plot.R . QTLmarkers.R . QTLwindows.R . autoStopCluster.R . find_genes_qtls_around_markers.R . gffQTLs.R . gtfGenes.R . import_gff_gtf.R . overlapping_among_groups.R . plot_overlapping.R . plot_qtl_info.R . qtl_enrich.R . relationship_plot.R . splitQTL_comment.R . sub_genes_markers.R . sub_genes_windows.R . sub_qtlEnrich_chrom.R . sub_qtlEnrich_geno.R . sub_qtls_markers.R . sub_qtls_windows.R . Full GALLO package functions and examples
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