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Fragman  

Fragment Analysis in R
View on CRAN: Click here


Download and install Fragman package within the R console
Install from CRAN:
install.packages("Fragman")

Install from Github:
library("remotes")
install_github("cran/Fragman")

Install by package version:
library("remotes")
install_version("Fragman", "1.0.9")



Attach the package and use:
library("Fragman")
Maintained by
Giovanny Covarrubias-Pazaran
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-09-18
Latest Update: 2018-01-14
Description:
Performs fragment analysis using genetic data coming from capillary electrophoresis machines. These are files with FSA extension which stands for FASTA-type file, and .txt files from Beckman CEQ 8000 system, both contain DNA fragment intensities read by machinery. In addition to visualization, it performs automatic scoring of SSRs (Sample Sequence Repeats; a type of genetic marker very common across the genome) and other type of PCR markers (standing for Polymerase Chain Reaction) in biparental populations such as F1, F2, BC (backcross), and diversity panels (collection of genetic diversity).
How to cite:
Giovanny Covarrubias-Pazaran (2015). Fragman: Fragment Analysis in R. R package version 1.0.9, https://cran.r-project.org/web/packages/Fragman. Accessed 12 Mar. 2025.
Previous versions and publish date:
1.0.1 (2015-09-22 12:47), 1.0.2 (2015-11-12 19:00), 1.0.3 (2016-03-16 10:01), 1.0.4 (2016-04-25 18:51), 1.0.5 (2016-06-24 19:13), 1.0.6 (2016-08-05 15:32), 1.0.7 (2016-09-01 19:36), 1.0.8 (2017-12-03 22:54), 1.0 (2015-09-18 22:02)
Other packages that cited Fragman R package
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Complete documentation for Fragman
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