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FossilSim  

Simulation and Plots for Fossil and Taxonomy Data
View on CRAN: Click here


Download and install FossilSim package within the R console
Install from CRAN:
install.packages("FossilSim")

Install from Github:
library("remotes")
install_github("cran/FossilSim")

Install by package version:
library("remotes")
install_version("FossilSim", "2.4.1")



Attach the package and use:
library("FossilSim")
Maintained by
Joelle Barido-Sottani
[Scholar Profile | Author Map]
First Published: 2018-07-28
Latest Update: 2022-07-19
Description:
Simulating taxonomy and fossil data on phylogenetic trees under mechanistic models of speciation, preservation and sampling.
How to cite:
Joelle Barido-Sottani (2018). FossilSim: Simulation and Plots for Fossil and Taxonomy Data. R package version 2.4.1, https://cran.r-project.org/web/packages/FossilSim. Accessed 06 May. 2025.
Previous versions and publish date:
2.0.0 (2018-07-28 17:50), 2.1.0 (2018-11-16 10:20), 2.1.1 (2019-02-21 19:00), 2.2.0 (2021-04-05 22:00), 2.3.0 (2022-04-19 15:52), 2.3.1 (2022-07-19 12:20), 2.3.2 (2023-10-05 18:00), 2.3.3 (2024-04-29 14:00), 2.4.0 (2024-09-05 21:40)
Other packages that cited FossilSim R package
View FossilSim citation profile
Other R packages that FossilSim depends, imports, suggests or enhances
Complete documentation for FossilSim
Functions, R codes and Examples using the FossilSim R package
Some associated functions: FossilSim . SAtree.from.fossils . SAtree . beast.fbd.format . count.fossils.binned . count.fossils . fossils . fossils.to.BEAST.constraints . fossils.to.BEAST.start.tree . fossils.to.paleotree.record . fossils.to.pyrate . get.tip.descs . paleotree.record.to.fossils . place.fossils . plot.fossils . plot.taxonomy . prune.fossil.tips . prune.fossils . rangeplot.asymmetric . reconcile.fossils.taxonomy . reconstructed.tree.fossilsjects . remove.stem.fossils . remove.stem.lineages . sampled.tree.from.combined . sim.anagenetic.species . sim.cryptic.species . sim.extant.samples . sim.fbd.age . sim.fbd.rateshift.taxa . sim.fbd.taxa . sim.fossils.environment . sim.fossils.intervals . sim.fossils.poisson . sim.gradient . sim.interval.ages . sim.taxonomy . sim.tip.samples . sim.trait.values . species.end . species.start . subsample.fossils.oldest.and.youngest . subsample.fossils.oldest . subsample.fossils.uniform . subsample.fossils.youngest . summary.taxonomy . taxonomy . tree.max . 
Some associated R codes: BEAST.output.R . FossilSim.R . SAtree.R . conversions.R . fossils.R . plot.asymmetric.tree.R . plot.fossils.R . plot.taxonomy.R . reconcile.fossils.taxonomy.R . sim.fbd.R . sim.fossils.R . sim.interval.ages.R . sim.taxonomy.R . sim.tip.sampling.R . sim.trait.values.R . subsampling.R . taxonomy.R . utils.R .  Full FossilSim package functions and examples
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