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Familia
View on CRAN: Click
here
Download and install Familia package within the R console
Install from CRAN:
install.packages("Familia")
Install from Github:
library("remotes")
install_github("cran/Familia") Install by package version:
library("remotes")
install_version("Familia", "2.0.0") Attach the package and use:
library("Familia")
Maintained by
Josue Chinchilla-Vargas
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-07-29
Latest Update: 2026-07-29
Description:
Provides a 'shiny' web application developed by the Breeding Insight team to support pedigree validation and ancestry assessment of plant and animal populations. The app integrates Mendelian error analysis, parentage assignment and genetic composition/ancestry methods to help researchers evaluate genomic relationships through an accessible, web-based interface without requiring command-line tools. Pedigree validation, Mendelian error analysis and parentage assignment build on the 'BIGpopA' package (<https://CRAN.R-project.org/package=BIGpopA>). Ancestry estimation uses the sparse non-negative matrix factorization method of Frichot et al. (2014) <doi:10.1534/genetics.113.160572> as implemented in the 'LEA' package by Frichot and Francois (2015) <doi:10.1111/2041-210X.12382>. Line and breed composition are estimated using the breed composition regression method of Funkhouser et al. (2017) <doi:10.2527/tas2016.0003>, extended to polyploid species by Sandercock et al. (2025) <doi:10.1002/tpg2.70067>.
How to cite:
Josue Chinchilla-Vargas (2026). Familia: 'shiny' Application for Population Structure and Ancestry Assessments. R package version 2.0.0, https://cran.r-project.org/web/packages/Familia. Accessed 25 Oct. 2026.
Previous versions and publish date:
1.0.3 (2026-07-29 20:30), (2026-08-24 17:50)
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