Other packages > Find by keyword >

FAMT  

Factor Analysis for Multiple Testing (FAMT) : Simultaneous Tests under Dependence in High-Dimensional Data
View on CRAN: Click here


Download and install FAMT package within the R console
Install from CRAN:
install.packages("FAMT")

Install from Github:
library("remotes")
install_github("cran/FAMT")

Install by package version:
library("remotes")
install_version("FAMT", "2.6")



Attach the package and use:
library("FAMT")
Maintained by
David Causeur
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2010-05-12
Latest Update: 2025-09-01
Description:
The method proposed in this package takes into account the impact of dependence on the multiple testing procedures for high-throughput data as proposed by Friguet et al. (2009). The common information shared by all the variables is modeled by a factor analysis structure. The number of factors considered in the model is chosen to reduce the false discoveries variance in multiple tests. The model parameters are estimated thanks to an EM algorithm. Adjusted tests statistics are derived, as well as the associated p-values. The proportion of true null hypotheses (an important parameter when controlling the false discovery rate) is also estimated from the FAMT model. Graphics are proposed to interpret and describe the factors.
How to cite:
David Causeur (2010). FAMT: Factor Analysis for Multiple Testing (FAMT) : Simultaneous Tests under Dependence in High-Dimensional Data. R package version 2.6, https://cran.r-project.org/web/packages/FAMT. Accessed 18 Sep. 2026.
Previous versions and publish date:
2.0 (2010-05-12 09:21), 2.1 (2010-07-24 21:41), 2.2 (2010-12-13 15:13), 2.3 (2012-10-29 08:57), 2.5 (2014-01-02 15:15), 2.6 (2022-05-09 12:20), (2026-07-09 08:03)
Other packages that cited FAMT R package
View FAMT citation profile
Other R packages that FAMT depends, imports, suggests or enhances
Complete documentation for FAMT
Functions, R codes and Examples using the FAMT R package
Some associated functions: FAMT-package . annotations . as.FAMTdata . covariates . defacto . emfa . expression . modelFAMT . nbfactors . pi0FAMT . raw.pvalues . residualsFAMT . summaryFAMT . 
Some associated R codes: FAMT_2.5-internal.R . as.FAMTdata.R . defacto.R . emfa.R . modelFAMT.R . nbfactors.R . pi0FAMT.R . raw.pvalues.R . residualsFAMT.R . summaryFAMT.R .  Full FAMT package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

data360r  
Wrapper for 'TCdata360' and 'Govdata360' API
Makes it easy to engage with the Application Program Interface (API) of the 'TCdata360' and 'Govdat ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
hmeasure  
The H-Measure and Other Scalar Classification Performance Metrics
Classification performance metrics that are derived from the ROC curve of a classifier. The package ...
Download / Learn more Package Citations See dependency  
downlit  
Syntax Highlighting and Automatic Linking
Syntax highlighting of R code, specifically designed for the needs of 'RMarkdown' packages like 'pk ...
Download / Learn more Package Citations See dependency  
eyelinker  
Import ASC Files from EyeLink Eye Trackers
Imports plain-text ASC data files from EyeLink eye trackers into (relatively) tidy data frames for ...
Download / Learn more Package Citations See dependency  
injectoR  
R Dependency Injection
R dependency injection framework. Dependency injection allows a program design to follow the depend ...
Download / Learn more Package Citations See dependency  

28,565

R Packages

239,283

Dependencies

75,677

Author Associations

28,566

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA