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ExpGenetic
View on CRAN: Click
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Download and install ExpGenetic package within the R console
Install from CRAN:
install.packages("ExpGenetic")
Install from Github:
library("remotes")
install_github("cran/ExpGenetic")
Install by package version:
library("remotes")
install_version("ExpGenetic", "0.1.0")
Attach the package and use:
library("ExpGenetic")
Maintained by
Yuqing Wu
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-09-09
Latest Update: 2022-09-09
Description:
Three functional modules, including genetic features, differential expression analysis and non-additive expression analysis were integrated into the package. And the package is suitable for RNA-seq and small RNA sequencing data. Besides, two methods of non-additive expression analysis were provided. One is the calculation of the additive (a) and dominant (d), the other is the evaluation of expression level dominance by comparing the total expression of the gene in hybrid offspring with the expression level in parents. For non-additive expression analysis of RNA-seq data, it is only applicable to hybrid offspring (including two sub-genomes) species for the time being.
How to cite:
Yuqing Wu (2022). ExpGenetic: Non-Additive Expression Analysis of Hybrid Offspring. R package version 0.1.0, https://cran.r-project.org/web/packages/ExpGenetic. Accessed 03 Dec. 2024.
Previous versions and publish date:
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Other R packages that ExpGenetic depends,
imports, suggests or enhances
Complete documentation for ExpGenetic
Functions, R codes and Examples using
the ExpGenetic R package
Some associated functions: Countfilter . F1_miRNA_count . F1_miRNA_rpm . F1_sRNA_seq . Get12Bins . GetDAtable . GetDEdata . P1_miRNA_count . P1_miRNA_rpm . P1_sRNA_seq . P2_miRNA_count . P2_miRNA_rpm . P2_sRNA_seq . Rpmfilter . VennData . VennPlot . basepreplot . lenplot . mirnapredata . polyDESeq . srnapredata .
Some associated R codes: Get12Bins.R . GetDAtable.R . GetDEdata.R . SpEXP.R . data.R . mirna_base_frequency.R . polyDEseq.R . sRNA_length_distribution.R . srna_filiter.R . Full ExpGenetic package functions and examples
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