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EstMix
View on CRAN: Click
here
Download and install EstMix package within the R console
Install from CRAN:
install.packages("EstMix")
Install from Github:
library("remotes")
install_github("cran/EstMix") Install by package version:
library("remotes")
install_version("EstMix", "1.0.1") Attach the package and use:
library("EstMix")
Maintained by
Xuan You
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-08-31
Latest Update: 2018-09-13
Description:
Includes R functions for the estimation of tumor clones percentages for both snp data and (whole) genome sequencing data. See Cheng, Y., Dai, J. Y., Paulson, T. G., Wang, X., Li, X., Reid, B. J., & Kooperberg, C. (2017). Quantification of multiple tumor clones using gene array and sequencing data. The Annals of Applied Statistics, 11(2), 967-991, for more details.
How to cite:
Xuan You (2018). EstMix: Tumor Clones Percentage Estimations. R package version 1.0.1, https://cran.r-project.org/web/packages/EstMix. Accessed 27 Aug. 2026.
Previous versions and publish date:
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Other R packages that EstMix depends,
imports, suggests or enhances
Complete documentation for EstMix
Functions, R codes and Examples using
the EstMix R package
Some associated functions: calc_1d . calc_1d_wgs . calc_2d . calc_2d_wgs . calc_3d . calc_n . calcll_1d_baf . calcll_baf . calcll_cpp . calcll_p1_cpp . calcll_p3 . combine_close_seg . est_mixture . est_mixture_wgs . example_data . f_baf . get_segmentation . get_var_tcn_baf . mean2 . preprocessing . seg_eg . sel_scale_1d . sel_scale_1d_wgs . sel_scale_2d . sel_scale_2d_wgs . wgs_eg .
Some associated R codes: RcppExports.R . calc_1d.R . calc_1d_wgs.R . calc_2d.R . calc_2d_wgs.R . calc_3d.R . calc_n.R . combine_close_seg.R . data.R . est_mixture.R . est_mixture_wgs.R . f_baf.R . get_segmentation.R . get_var_tcn_baf.R . mean2.R . preprocessing.R . sel_scale_1d.R . sel_scale_1d_wgs.R . sel_scale_2d.R . sel_scale_2d_wgs.R . Full EstMix package functions and examples
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