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EpiReport
View on CRAN: Click
here
Download and install EpiReport package within the R console
Install from CRAN:
install.packages("EpiReport")
Install from Github:
library("remotes")
install_github("cran/EpiReport")
Install by package version:
library("remotes")
install_version("EpiReport", "1.0.2")
Attach the package and use:
library("EpiReport")
Maintained by
Lore Merdrignac
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-11-14
Latest Update: 2021-07-05
Description:
Drafting an epidemiological report in 'Microsoft Word' format for a given disease,
similar to the Annual Epidemiological Reports published by the European Centre
for Disease Prevention and Control. Through standalone functions, it is specifically
designed to generate each disease specific output presented in these reports and includes:
- Table with the distribution of cases by Member State over the last five years;
- Seasonality plot with the distribution of cases at the European Union / European Economic Area level,
by month, over the past five years;
- Trend plot with the trend and number of cases at the European Union / European Economic Area level,
by month, over the past five years;
- Age and gender bar graph with the distribution of cases at the European Union / European Economic Area level.
Two types of datasets can be used:
- The default dataset of dengue 2015-2019 data;
- Any dataset specified as described in the vignette.
How to cite:
Lore Merdrignac (2018). EpiReport: Epidemiological Report. R package version 1.0.2, https://cran.r-project.org/web/packages/EpiReport. Accessed 07 Nov. 2024.
Previous versions and publish date:
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Other R packages that EpiReport depends,
imports, suggests or enhances
Complete documentation for EpiReport
Functions, R codes and Examples using
the EpiReport R package
Some associated functions: AERparams . DENGUE2019 . EcdcColors . MSCode . SALM2016 . body_replace_gg_at_bkm . cleanECDCTable . cleanMeasureCode . filterDisease . getAER . getAgeGender . getMap . getSeason . getTableByMS . getTemplate . getTrend . includeMap . orderQuasinum . plotAge . plotAgeGender . plotBar . plotBarGrouped . plotBarGroupedH . plotBarH . plotPie . plotSeasonality . plotTS . plotTS12MAvg . plotTSGrouped . previewMap . shapeECDCFlexTable . toCapTitle .
Some associated R codes: AER_age_gender_bar.R . AER_maps.R . AER_report.R . AER_seasonality_graph.R . AER_table.R . AER_trend_graph.R . EcdcColors.R . data.R . discouraged_functions.R . internal_functions.R . order_quasinum.R . plotBarGroupedH.R . plotBarH.R . plotPie.R . plotTS.R . plotTSGrouped.R . Full EpiReport package functions and examples
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