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EpiEstim
View on CRAN: Click
here
Download and install EpiEstim package within the R console
Install from CRAN:
install.packages("EpiEstim")
Install from Github:
library("remotes")
install_github("cran/EpiEstim")
Install by package version:
library("remotes")
install_version("EpiEstim", "2.2-4")
Attach the package and use:
library("EpiEstim")
Maintained by
Anne Cori
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.EpiEstim . https://github.com/mrc-ide/EpiEstim/issues . https://github.com/mrc-ide/EpiEstim . EpiEstim results . EpiEstim.pdf . EpiEstim demonstration . EpiEstim_2.2-4.tar.gz . EpiEstim_2.2-4.zip . EpiEstim_2.2-4.zip . EpiEstim_2.2-4.zip . EpiEstim_2.2-4.tgz . EpiEstim_2.2-4.tgz . EpiEstim_2.2-4.tgz . EpiEstim_2.2-4.tgz . EpiEstim archive . https://CRAN.R-project.org/package=EpiEstim .
First Published: 2012-06-07
Latest Update: 2021-01-07
Description:
Tools to quantify transmissibility throughout
an epidemic from the analysis of time series of incidence as described in
Cori et al. (2013) and Wallinga and Teunis (2004)
.
How to cite:
Anne Cori (2012). EpiEstim: Estimate Time Varying Reproduction Numbers from Epidemic Curves. R package version 2.2-4, https://cran.r-project.org/web/packages/EpiEstim. Accessed 08 May. 2025.
Previous versions and publish date:
Other packages that cited EpiEstim R package
View EpiEstim citation profile
Other R packages that EpiEstim depends,
imports, suggests or enhances
Complete documentation for EpiEstim
Functions, R codes and Examples using
the EpiEstim R package
Some associated functions: DiscrSI . EstimateR . Flu1918 . Flu2009 . Measles1861 . MockRotavirus . OverallInfectivity . SARS2003 . Smallpox1972 . WT . check_cdt_samples_convergence . coarse2estim . discr_si . estimate_R . estimate_R_plots . flu_2009_NYC_school . init_mcmc_params . make_config . make_mcmc_control . mers_2014_15 . overall_infectivity . plot.estimate_R . sample_posterior_R . wallinga_teunis .
Some associated R codes: check_cdt_samples_convergence.R . coarse2estim.R . compatibility.R . data.R . discr_si.R . estimate_R_plots.R . estimate_r.R . init_mcmc_params.R . make_config.R . make_mcmc_control.R . overall_infectivity.R . plot.R . sample_posterior_R.R . utilities.R . wallinga_teunis.R . Full EpiEstim package functions and examples
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