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EmbedSOM  

Fast Embedding Guided by Self-Organizing Map
View on CRAN: Click here


Download and install EmbedSOM package within the R console
Install from CRAN:
install.packages("EmbedSOM")

Install from Github:
library("remotes")
install_github("cran/EmbedSOM")

Install by package version:
library("remotes")
install_version("EmbedSOM", "2.2.1")



Attach the package and use:
library("EmbedSOM")
Maintained by
Mirek Kratochvil
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-08-19
Latest Update: 2025-01-31
Description:
Provides a smooth mapping of multidimensional points into low-dimensional space defined by a self-organizing map. Designed to work with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al. (2019) .
How to cite:
Mirek Kratochvil (2019). EmbedSOM: Fast Embedding Guided by Self-Organizing Map. R package version 2.2.1, https://cran.r-project.org/web/packages/EmbedSOM. Accessed 28 Aug. 2026.
Previous versions and publish date:
1.9.1 (2019-08-19 20:00), 1.9 (2019-08-19 11:50), 2.1.1 (2020-02-12 13:20), 2.1.2 (2022-07-05 12:20), 2.2 (2025-01-31 23:30), (2026-07-09 08:03)
Other packages that cited EmbedSOM R package
View EmbedSOM citation profile
Other R packages that EmbedSOM depends, imports, suggests or enhances
Complete documentation for EmbedSOM
Functions, R codes and Examples using the EmbedSOM R package
Some associated functions: ClusterPalette . EmbedSOM . ExprColors . ExpressionGradient . ExpressionPalette . GQTSOM . GraphCoords . Initialize_PCA . MSTCoords . MapDataToCodes . NormalizeColor . PlotData . PlotDefault . PlotEmbed . PlotGG . PlotId . RandomMap . SOM . UMAPCoords . UMatrixCoords . kMeansMap . kNNCoords . tSNECoords . uwotCoords . 
Some associated R codes: coords.R . embed.R . som.R . utils.R .  Full EmbedSOM package functions and examples
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