Other packages > Find by keyword >

Ease  

Simulating Explicit Population Genetics Models
View on CRAN: Click here


Download and install Ease package within the R console
Install from CRAN:
install.packages("Ease")

Install from Github:
library("remotes")
install_github("cran/Ease")

Install by package version:
library("remotes")
install_version("Ease", "0.1.2")



Attach the package and use:
library("Ease")
Maintained by
Ehouarn Le Faou
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-09-19
Latest Update: 2022-11-07
Description:
Implementation in a simple and efficient way of fully customisable population genetics simulations, considering multiple loci that have epistatic interactions. Specifically suited to the modelling of multilocus nucleocytoplasmic systems (with both diploid and haploid loci), it is nevertheless possible to simulate purely diploid (or purely haploid) genetic models. Examples of models that can be simulated with Ease are numerous, for example models of genetic incompatibilities as presented by Marie-Orleach et al. (2022) . Many others are conceivable, although few are actually explored, Ease having been developed in particular to provide a solution so that these kinds of models can be simulated simply.
How to cite:
Ehouarn Le Faou (2022). Ease: Simulating Explicit Population Genetics Models. R package version 0.1.2, https://cran.r-project.org/web/packages/Ease. Accessed 27 Aug. 2026.
Previous versions and publish date:
0.1.0 (2022-09-19 10:26), 0.1.1 (2022-10-18 18:07), (2026-07-09 08:02)
Other packages that cited Ease R package
View Ease citation profile
Other R packages that Ease depends, imports, suggests or enhances
Complete documentation for Ease
Functions, R codes and Examples using the Ease R package
Some associated functions: Genome-class . IDgenomeGeneration . IDgenotypeGeneration . IDhaplotypeGeneration . METAPOP_SIMULATION . Metapopulation-class . MutationMatrix-class . Population-class . Selection-class . alleleFreqMatGeneration . areThereHomoz . catn . check.genome . check.metapopulation . check.mutationMatrix . check.population . check.selection . extractAlleleComb . genotyping . getCustomOutput . getRecords . getResults . haploCrossMatrix . haplotyping . initialize-Genome-method . initialize-Metapopulation-method . initialize-MutationMatrix-method . initialize-Population-method . initialize-Selection-method . is.correct.transition.matrix . is.default.matrix . is.probability.matrix . isAffected . isHaploSelectFormula . listing . meiosisMatrix . mutMatFriendly . mutMatRates . mutation . outFunct . print-Genome-method . print-Metapopulation-method . print-MutationMatrix-method . print-Population-method . print-Selection-method . recombinationMatrix . rowResultGen . selectFormIntoVect . selectInputTreatment . selection.form.treatment . setGenome . setMetapopulation . setMutationMatrix . setPopulation . setSelectNeutral . setSelectOnGametes . setSelectOnGametesProd . setSelectOnInds . show-Genome-method . show-Metapopulation-method . show-MutationMatrix-method . show-Population-method . show-Selection-method . simulate-Metapopulation-method . whichHomoz . 
Some associated R codes: GenomeClass.R . MetapopulationClass.R . ModelFunctions.R . MutationMatrixClass.R . PopulationClass.R . RcppExports.R . SelectionClass.R . ToolFunctions.R . UserFunctions.R .  Full Ease package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

BetterReg  
Better Statistics for OLS and Binomial Logistic Regression
Provides squared semi partial correlations, tolerance, Mahalanobis, Likelihood Ratio Chi Square, and ...
Download / Learn more Package Citations See dependency  
Bodi  
Boosting Diversity in Regression Ensembles
A gradient boosting-based algorithm by incorporating a diversity term to guide the gradient boosting ...
Download / Learn more Package Citations See dependency  
robustX  
'eXtra' / 'eXperimental' Functionality for Robust Statistics
Robustness -- 'eXperimental', 'eXtraneous', or 'eXtraordinary' Functionality for Robust Statistics. ...
Download / Learn more Package Citations See dependency  
ROI.plugin.qpoases  
'qpOASES' Plugin for the 'R' Optimization Infrastructure
Enhances the 'R' Optimization Infrastructure ('ROI') package with the quadratic solver 'qpOASES'. M ...
Download / Learn more Package Citations See dependency  
risksetROC  
Riskset ROC Curve Estimation from Censored Survival Data
Compute time-dependent Incident/dynamic accuracy measures (ROC curve, AUC, integrated AUC )from cen ...
Download / Learn more Package Citations See dependency  
IntervalQuestionStat  
Tools to Deal with Interval-Valued Responses in Questionnaires
A user-friendly toolbox for doing the statistical analysis of interval-valued responses in question ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA