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Ease  

Simulating Explicit Population Genetics Models
View on CRAN: Click here


Download and install Ease package within the R console
Install from CRAN:
install.packages("Ease")

Install from Github:
library("remotes")
install_github("cran/Ease")

Install by package version:
library("remotes")
install_version("Ease", "0.1.2")



Attach the package and use:
library("Ease")
Maintained by
Ehouarn Le Faou
[Scholar Profile | Author Map]
First Published: 2022-09-19
Latest Update: 2022-11-07
Description:
Implementation in a simple and efficient way of fully customisable population genetics simulations, considering multiple loci that have epistatic interactions. Specifically suited to the modelling of multilocus nucleocytoplasmic systems (with both diploid and haploid loci), it is nevertheless possible to simulate purely diploid (or purely haploid) genetic models. Examples of models that can be simulated with Ease are numerous, for example models of genetic incompatibilities as presented by Marie-Orleach et al. (2022) . Many others are conceivable, although few are actually explored, Ease having been developed in particular to provide a solution so that these kinds of models can be simulated simply.
How to cite:
Ehouarn Le Faou (2022). Ease: Simulating Explicit Population Genetics Models. R package version 0.1.2, https://cran.r-project.org/web/packages/Ease. Accessed 29 Mar. 2025.
Previous versions and publish date:
0.1.0 (2022-09-19 10:26), 0.1.1 (2022-10-18 18:07)
Other packages that cited Ease R package
View Ease citation profile
Other R packages that Ease depends, imports, suggests or enhances
Complete documentation for Ease
Functions, R codes and Examples using the Ease R package
Some associated functions: Genome-class . IDgenomeGeneration . IDgenotypeGeneration . IDhaplotypeGeneration . METAPOP_SIMULATION . Metapopulation-class . MutationMatrix-class . Population-class . Selection-class . alleleFreqMatGeneration . areThereHomoz . catn . check.genome . check.metapopulation . check.mutationMatrix . check.population . check.selection . extractAlleleComb . genotyping . getCustomOutput . getRecords . getResults . haploCrossMatrix . haplotyping . initialize-Genome-method . initialize-Metapopulation-method . initialize-MutationMatrix-method . initialize-Population-method . initialize-Selection-method . is.correct.transition.matrix . is.default.matrix . is.probability.matrix . isAffected . isHaploSelectFormula . listing . meiosisMatrix . mutMatFriendly . mutMatRates . mutation . outFunct . print-Genome-method . print-Metapopulation-method . print-MutationMatrix-method . print-Population-method . print-Selection-method . recombinationMatrix . rowResultGen . selectFormIntoVect . selectInputTreatment . selection.form.treatment . setGenome . setMetapopulation . setMutationMatrix . setPopulation . setSelectNeutral . setSelectOnGametes . setSelectOnGametesProd . setSelectOnInds . show-Genome-method . show-Metapopulation-method . show-MutationMatrix-method . show-Population-method . show-Selection-method . simulate-Metapopulation-method . whichHomoz . 
Some associated R codes: GenomeClass.R . MetapopulationClass.R . ModelFunctions.R . MutationMatrixClass.R . PopulationClass.R . RcppExports.R . SelectionClass.R . ToolFunctions.R . UserFunctions.R .  Full Ease package functions and examples
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