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Eagle
View on CRAN: Click
here
Download and install Eagle package within the R console
Install from CRAN:
install.packages("Eagle")
Install from Github:
library("remotes")
install_github("cran/Eagle")
Install by package version:
library("remotes")
install_version("Eagle", "2.5")
Attach the package and use:
library("Eagle")
Maintained by
Andrew George
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-08-28
Latest Update: 2021-11-30
Description:
An implementation of multiple-locus association mapping on a genome-wide scale. 'Eagle' can handle inbred and outbred study populations, populations of arbitrary unknown complexity, and data larger than the memory capacity of the computer. Since 'Eagle' is based on linear mixed models, it is best suited to the analysis of data on continuous traits. However, it can tolerate non-normal data. 'Eagle' reports, as its findings, the best set of snp in strongest association with a trait. For users unfamiliar with R, to perform an analysis, run 'OpenGUI()'. This opens a web browser to the menu-driven user interface for the input of data, and for performing genome-wide analysis.
How to cite:
Andrew George (2017). Eagle: Multiple Locus Association Mapping on a Genome-Wide Scale. R package version 2.5, https://cran.r-project.org/web/packages/Eagle. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0.2 (2017-08-28 15:06), 1.1.0 (2018-08-22 10:00), 1.2.0 (2018-12-17 22:40), 1.3.0 (2019-01-31 09:53), 1.4.0 (2019-04-23 12:00), 1.5.0 (2019-05-17 09:20), 1.5.1 (2019-05-24 06:40), 1.5.2 (2019-08-22 06:20), 2.0.0 (2019-11-07 06:40), 2.1.0 (2019-11-14 07:20), 2.1.1 (2019-11-17 23:10), 2.2 (2020-03-03 06:20), 2.3 (2020-07-22 08:32), 2.4.1 (2020-10-19 06:30), 2.4.2 (2020-12-06 07:20), 2.4.3 (2021-01-12 08:40), 2.4.4 (2021-04-22 06:30), 2.4.5 (2021-06-10 09:00), 2.4 (2020-08-26 19:10)
Other packages that cited Eagle R package
View Eagle citation profile
Other R packages that Eagle depends,
imports, suggests or enhances
Complete documentation for Eagle
Functions, R codes and Examples using
the Eagle R package
Some associated functions: AM . Eagle-package . FPR4AM . OpenGUI . PlotAM . ReadMap . ReadMarker . ReadPheno . ReadZmat . SummaryAM .
Some associated R codes: AM.R . FPR4AM.R . GenomicRel.R . OpenGUI.R . PlotAM.R . RcppExports.R . ReadMap.R . ReadMarkerBin.R . ReadPheno.R . ReadVCF.R . ReadZmat.R . ReshapeM.R . build_design_matrix.R . calcMMt.R . calcVC.R . calc_extBIC.R . calc_extBIC_MLE.R . calculateH.R . calculateMMt.R . calculateMMt_sqrt_and_sqrtinv.R . calculateP.R . calculate_a_and_vara.R . calculate_a_and_vara_batch.R . calculate_reduced_a.R . calculate_reduced_a_batch.R . calculate_reduced_vara.R . check_for_NA_in_trait.R . check_inputs.R . check_inputs_mlam.R . constructX.R . create_ascii.R . create_bin.R . create_vcf_bin.R . doquiet.R . emma_MLE.R . emma_REMLE.R . emma_delta_ML_LL_w_Z.R . emma_delta_ML_LL_wo_Z.R . emma_delta_ML_dLL_w_Z.R . emma_delta_REML_LL_w_Z.R . emma_delta_REML_dLL_w_Z.R . emma_eigen_L_w_Z.R . emma_eigen_L_wo_Z.R . emma_eigen_R_w_Z.R . emma_eigen_R_wo_Z.R . emma_misc.R . extract_geno.R . extract_geno_Mt.R . find_qtl.R . form_results.R . fullpath.R . onAttach.R . print_final.R . print_header.R . print_results.R . print_title.R . summary_am.R . Full Eagle package functions and examples
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