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EZbakR  

Analyze and Integrate Any Type of Nucleotide Recoding RNA-Seq Data
View on CRAN: Click here


Download and install EZbakR package within the R console
Install from CRAN:
install.packages("EZbakR")

Install from Github:
library("remotes")
install_github("cran/EZbakR")

Install by package version:
library("remotes")
install_version("EZbakR", "0.1.0")



Attach the package and use:
library("EZbakR")
Maintained by
Isaac Vock
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-12-10
Latest Update: 2025-12-10
Description:
A complete rewrite and reimagining of 'bakR' (see 'Vock et al.' (2025) <doi:10.1371/journal.pcbi.1013179>). Designed to support a wide array of analyses of nucleotide recoding RNA-seq (NR-seq) datasets of any type, including TimeLapse-seq/SLAM-seq/TUC-seq, Start-TimeLapse-seq (STL-seq), TT-TimeLapse-seq (TT-TL-seq), and subcellular NR-seq. 'EZbakR' extends standard NR-seq standard NR-seq mutational modeling to support multi-label analyses (e.g., 4sU and 6sG dual labeling), and implements an improved hierarchical model to better account for transcript-to-transcript variance in metabolic label incorporation. 'EZbakR' also generalized dynamical systems modeling of NR-seq data to support analyses of premature mRNA processing and flow between subcellular compartments. Finally, 'EZbakR' implements flexible and well-powered comparative analyses of all estimated parameters via design matrix-specified generalized linear modeling.
How to cite:
Isaac Vock (2025). EZbakR: Analyze and Integrate Any Type of Nucleotide Recoding RNA-Seq Data. R package version 0.1.0, https://cran.r-project.org/web/packages/EZbakR. Accessed 25 Oct. 2026.
Previous versions and publish date:
0.1.0 (2025-12-10 22:20), (2026-10-14 01:01)
Other packages that cited EZbakR R package
View EZbakR citation profile
Other R packages that EZbakR depends, imports, suggests or enhances
Complete documentation for EZbakR
Functions, R codes and Examples using the EZbakR R package
Full EZbakR package functions and examples
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