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EDISON  

Network Reconstruction and Changepoint Detection
View on CRAN: Click here


Download and install EDISON package within the R console
Install from CRAN:
install.packages("EDISON")

Install from Github:
library("remotes")
install_github("cran/EDISON")

Install by package version:
library("remotes")
install_version("EDISON", "1.1.1")



Attach the package and use:
library("EDISON")
Maintained by
Frank Dondelinger
[Scholar Profile | Author Map]
First Published: 2012-07-16
Latest Update: 2016-03-30
Description:
Package EDISON (Estimation of Directed Interactions from Sequences Of Non-homogeneous gene expression) runs an MCMC simulation to reconstruct networks from time series data, using a non-homogeneous, time-varying dynamic Bayesian network. Networks segments and changepoints are inferred concurrently, and information sharing priors provide a reduction of the inference uncertainty.
How to cite:
Frank Dondelinger (2012). EDISON: Network Reconstruction and Changepoint Detection. R package version 1.1.1, https://cran.r-project.org/web/packages/EDISON. Accessed 27 Feb. 2025.
Previous versions and publish date:
1.0 (2012-07-16 17:24), 1.1 (2014-09-14 09:48)
Other packages that cited EDISON R package
View EDISON citation profile
Other R packages that EDISON depends, imports, suggests or enhances
Complete documentation for EDISON
Functions, R codes and Examples using the EDISON R package
Some associated functions: AcceptableMove . BinoHyperMove . BinoHyperRatio . CalculateChanges . CalculateLikelihoodRatio . CalculatePriorRatio . CollectNetworkInfo . EDISON-package . EDISON.run . ExpHyperMove . ExpHyperRatioTarget . HyperParms . HyperparameterMove . NetworkProbBino . NetworkProbExp . NetworkRatioBino . NetworkRatioExp . PriorRatioPoisson . ProposeDiscrete . addProposalNetworkInfo . bp.computeAlpha . buildXY . calculateCPPGlobal . calculateCPProbabilities . calculateEdgeProbabilities . calculateEdgeProbabilitiesSegs . calculateEdgeProbabilitiesTimePoints . computePx . computeRho4 . convert_nets . cp.birth . cp.death . cp.shift . defaultOptions . dinvgamma . fix_eigenvalues . generateNetwork . init . main . make_structure_move . output . phase.update . proposalTuning . proposeContinuous . psrf . psrf_check . psrf_check_hyper . readDataTS . rinvgamma . runDBN . sampleBinit . sampleBxy . sampleDelta2 . sampleK . sampleParms . sampleSig2 . simulateNetwork . updateSigMulti . updateSigSolo . 
Some associated R codes: AcceptableMove.R . BinoHyperMove.R . BinoHyperRatio.R . CalculateChanges.R . CalculateLikelihoodRatio.R . CalculatePriorRatio.R . CollectNetworkInfo.R . EDISON-package.R . EDISON.run.R . ExpHyperMove.R . ExpHyperRatioTarget.R . HyperParms.R . HyperparameterMove.R . NetworkProbBino.R . NetworkProbExp.R . NetworkRatioBino.R . NetworkRatioExp.R . PriorRatioPoisson.R . ProposeDiscrete.R . addProposalNetworkInfo.R . bp.computeAlpha.R . buildXY.R . calculateCPPGlobal.R . calculateCPProbabilities.R . calculateEdgeProbabilities.R . calculateEdgeProbabilitiesSegs.R . calculateEdgeProbabilitiesTimePoints.R . computePx.R . computeRho4.R . convert_nets.R . cp.birth.R . cp.death.R . cp.shift.R . defaultOptions.R . dinvgamma.R . fix_eigenvalues.R . generateNetwork.R . init.R . main.R . make_structure_move.R . output.R . phase.update.R . proposalTuning.R . proposeContinuous.R . psrf.R . psrf_check.R . psrf_check_hyper.R . readDataTS.R . rinvgamma.R . runDBN.R . sampleBinit.R . sampleBxy.R . sampleDelta2.R . sampleK.R . sampleParms.R . sampleSig2.R . simulateNetwork.R . updateNetworkInfo.R . updateSigMulti.R . updateSigSolo.R .  Full EDISON package functions and examples
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