Other packages > Find by keyword >

EDISON  

Network Reconstruction and Changepoint Detection
View on CRAN: Click here


Download and install EDISON package within the R console
Install from CRAN:
install.packages("EDISON")

Install from Github:
library("remotes")
install_github("cran/EDISON")

Install by package version:
library("remotes")
install_version("EDISON", "1.1.1")



Attach the package and use:
library("EDISON")
Maintained by
Frank Dondelinger
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-07-16
Latest Update: 2016-03-30
Description:
Package EDISON (Estimation of Directed Interactions from Sequences Of Non-homogeneous gene expression) runs an MCMC simulation to reconstruct networks from time series data, using a non-homogeneous, time-varying dynamic Bayesian network. Networks segments and changepoints are inferred concurrently, and information sharing priors provide a reduction of the inference uncertainty.
How to cite:
Frank Dondelinger (2012). EDISON: Network Reconstruction and Changepoint Detection. R package version 1.1.1, https://cran.r-project.org/web/packages/EDISON. Accessed 03 Feb. 2025.
Previous versions and publish date:
1.0 (2012-07-16 17:24), 1.1 (2014-09-14 09:48)
Other packages that cited EDISON R package
View EDISON citation profile
Other R packages that EDISON depends, imports, suggests or enhances
Complete documentation for EDISON
Functions, R codes and Examples using the EDISON R package
Some associated functions: AcceptableMove . BinoHyperMove . BinoHyperRatio . CalculateChanges . CalculateLikelihoodRatio . CalculatePriorRatio . CollectNetworkInfo . EDISON-package . EDISON.run . ExpHyperMove . ExpHyperRatioTarget . HyperParms . HyperparameterMove . NetworkProbBino . NetworkProbExp . NetworkRatioBino . NetworkRatioExp . PriorRatioPoisson . ProposeDiscrete . addProposalNetworkInfo . bp.computeAlpha . buildXY . calculateCPPGlobal . calculateCPProbabilities . calculateEdgeProbabilities . calculateEdgeProbabilitiesSegs . calculateEdgeProbabilitiesTimePoints . computePx . computeRho4 . convert_nets . cp.birth . cp.death . cp.shift . defaultOptions . dinvgamma . fix_eigenvalues . generateNetwork . init . main . make_structure_move . output . phase.update . proposalTuning . proposeContinuous . psrf . psrf_check . psrf_check_hyper . readDataTS . rinvgamma . runDBN . sampleBinit . sampleBxy . sampleDelta2 . sampleK . sampleParms . sampleSig2 . simulateNetwork . updateSigMulti . updateSigSolo . 
Some associated R codes: AcceptableMove.R . BinoHyperMove.R . BinoHyperRatio.R . CalculateChanges.R . CalculateLikelihoodRatio.R . CalculatePriorRatio.R . CollectNetworkInfo.R . EDISON-package.R . EDISON.run.R . ExpHyperMove.R . ExpHyperRatioTarget.R . HyperParms.R . HyperparameterMove.R . NetworkProbBino.R . NetworkProbExp.R . NetworkRatioBino.R . NetworkRatioExp.R . PriorRatioPoisson.R . ProposeDiscrete.R . addProposalNetworkInfo.R . bp.computeAlpha.R . buildXY.R . calculateCPPGlobal.R . calculateCPProbabilities.R . calculateEdgeProbabilities.R . calculateEdgeProbabilitiesSegs.R . calculateEdgeProbabilitiesTimePoints.R . computePx.R . computeRho4.R . convert_nets.R . cp.birth.R . cp.death.R . cp.shift.R . defaultOptions.R . dinvgamma.R . fix_eigenvalues.R . generateNetwork.R . init.R . main.R . make_structure_move.R . output.R . phase.update.R . proposalTuning.R . proposeContinuous.R . psrf.R . psrf_check.R . psrf_check_hyper.R . readDataTS.R . rinvgamma.R . runDBN.R . sampleBinit.R . sampleBxy.R . sampleDelta2.R . sampleK.R . sampleParms.R . sampleSig2.R . simulateNetwork.R . updateNetworkInfo.R . updateSigMulti.R . updateSigSolo.R .  Full EDISON package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

metaboData  
Example Metabolomics Data Sets
Data sets from a variety of biological sample matrices, analysed using a number of mass spectrometr ...
Download / Learn more Package Citations See dependency  
cmce  
Computer Model Calibration for Deterministic and Stochastic Simulators
Implements the Bayesian calibration model described in Pratola and Chkrebtii (2018) ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
sgof  
Multiple Hypothesis Testing
Seven different methods for multiple testing problems. The SGoF-type methods (see for example, Carva ...
Download / Learn more Package Citations See dependency  
HGMND  
Heterogeneous Graphical Model for Non-Negative Data
Graphical model is an informative and powerful tool to explore the conditional dependence relationsh ...
Download / Learn more Package Citations See dependency  
Bolstad2  
Bolstad Functions
A set of R functions and data sets for the book "Understanding Computational Bayesian Statistics." T ...
Download / Learn more Package Citations See dependency  

23,630

R Packages

204,513

Dependencies

64,101

Author Associations

23,581

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA