Other packages > Find by keyword >

EBPRS  

Derive Polygenic Risk Score Based on Emprical Bayes Theory
View on CRAN: Click here


Download and install EBPRS package within the R console
Install from CRAN:
install.packages("EBPRS")

Install from Github:
library("remotes")
install_github("cran/EBPRS")

Install by package version:
library("remotes")
install_version("EBPRS", "2.1.0")



Attach the package and use:
library("EBPRS")
Maintained by
Shuang Song
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-11-03
Latest Update: 2020-08-26
Description:
EB-PRS is a novel method that leverages information for effect sizes across all the markers to improve the prediction accuracy. No parameter tuning is needed in the method, and no external information is needed. This R-package provides the calculation of polygenic risk scores from the given training summary statistics and testing data. We can use EB-PRS to extract main information, estimate Empirical Bayes parameters, derive polygenic risk scores for each individual in testing data, and evaluate the PRS according to AUC and predictive r2. See Song et al. (2020) for a detailed presentation of the method.
How to cite:
Shuang Song (2018). EBPRS: Derive Polygenic Risk Score Based on Emprical Bayes Theory. R package version 2.1.0, https://cran.r-project.org/web/packages/EBPRS. Accessed 05 Jun. 2026.
Previous versions and publish date:
1.0.1 (2018-11-03 16:30), 1.1.2 (2019-02-14 13:52), 1.1.5 (2019-08-07 10:50), 1.2.0 (2019-10-10 15:10), 1.2.1 (2019-10-12 09:10), 1.2.2 (2019-11-07 17:10), 2.0.1 (2020-01-16 17:50), 2.0.3 (2020-02-12 06:50), 2.0.4 (2020-07-10 12:10), 2.1.0 (2020-08-26 07:40)
Other packages that cited EBPRS R package
View EBPRS citation profile
Other R packages that EBPRS depends, imports, suggests or enhances
Complete documentation for EBPRS
Functions, R codes and Examples using the EBPRS R package
Some associated functions: EBPRS . EBPRSpackage . read_plink . traindat . validate . 
Some associated R codes: agtc.R . exdata.R . extractInfo.R . findPara.R . findpara_ltdr.R . generateScore.R . packageEBPRS.R . printAUC.R . read_plink.R . snpEM.R . snpEMrobust.R . validate.R .  Full EBPRS package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

ibb  
R Wrapper for Istanbul Municipality Open Data Portal
Call wrappers for Istanbul Metropolitan Municipality's Open Data Portal (Turkish: Istanbul B ...
Download / Learn more Package Citations See dependency  
envirem  
Generation of ENVIREM Variables
Generation of bioclimatic rasters that are complementary to the typical 19 bioclim variables. ...
Download / Learn more Package Citations See dependency  
msm  
Multi-State Markov and Hidden Markov Models in Continuous Time
Functions for fitting continuous-time Markov and hidden Markov multi-state models to longitudinal d ...
Download / Learn more Package Citations See dependency  
crossurr  
Cross-Fitting for Doubly Robust Evaluation of High-Dimensional Surrogate Markers
Doubly robust methods for evaluating surrogate markers as outlined in: Agniel D, Hejblum BP, Thiebau ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

27,268

R Packages

233,548

Dependencies

72,590

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA