Other packages > Find by keyword >

DiPhiSeq  

Robust Tests for Differential Dispersion and Differential Expression in RNA-Sequencing Data
View on CRAN: Click here


Download and install DiPhiSeq package within the R console
Install from CRAN:
install.packages("DiPhiSeq")

Install from Github:
library("remotes")
install_github("cran/DiPhiSeq")

Install by package version:
library("remotes")
install_version("DiPhiSeq", "0.2.0")



Attach the package and use:
library("DiPhiSeq")
Maintained by
Jun Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-06-14
Latest Update: 2018-10-24
Description:
Implements the algorithm described in Jun Li and Alicia T. Lamere, "DiPhiSeq: Robust comparison of expression levels on RNA-Seq data with large sample sizes" (Unpublished). Detects not only genes that show different average expressions ("differential expression", DE), but also genes that show different diversities of expressions in different groups ("differentially dispersed", DD). DD genes can be important clinical markers. 'DiPhiSeq' uses a redescending penalty on the quasi-likelihood function, and thus has superior robustness against outliers and other noise. Updates from version 0.1.0: (1) Added the option of using adaptive initial value for phi. (2) Added a function for estimating the proportion of outliers in the data. (3) Modified the input parameter names for clarity, and modified the output format for the main function.
How to cite:
Jun Li (2018). DiPhiSeq: Robust Tests for Differential Dispersion and Differential Expression in RNA-Sequencing Data. R package version 0.2.0, https://cran.r-project.org/web/packages/DiPhiSeq. Accessed 06 Mar. 2026.
Previous versions and publish date:
0.1.0 (2018-06-14 21:00)
Other packages that cited DiPhiSeq R package
View DiPhiSeq citation profile
Other R packages that DiPhiSeq depends, imports, suggests or enhances
Complete documentation for DiPhiSeq
Functions, R codes and Examples using the DiPhiSeq R package
Some associated functions: diphiseq . example_data . outprop . robnb . robtest . 
Some associated R codes: data.R . diphiseq.R . robstat.R . robtest.R .  Full DiPhiSeq package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

lbfgs  
Limited-memory BFGS Optimization
A wrapper built around the libLBFGS optimization library by Naoaki Okazaki. The lbfgs package implem ...
Download / Learn more Package Citations See dependency  
DatabionicSwarm  
Swarm Intelligence for Self-Organized Clustering
Algorithms implementing populations of agents that interact with one another and sense their environ ...
Download / Learn more Package Citations See dependency  
solitude  
An Implementation of Isolation Forest
Isolation forest is anomaly detection method introduced by the paper Isolation based Anomaly Detecti ...
Download / Learn more Package Citations See dependency  
EMVS  
The Expectation-Maximization Approach to Bayesian Variable Selection
An efficient expectation-maximization algorithm for fitting Bayesian spike-and-slab regularization p ...
Download / Learn more Package Citations See dependency  
openxlsx  
Read, Write and Edit xlsx Files
Simplifies the creation of Excel .xlsx files by providing a high level interface to writing, stylin ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,244

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA