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DarkDiv  

Estimating Dark Diversity and Site-Specific Species Pools
View on CRAN: Click here


Download and install DarkDiv package within the R console
Install from CRAN:
install.packages("DarkDiv")

Install from Github:
library("remotes")
install_github("cran/DarkDiv")

Install by package version:
library("remotes")
install_version("DarkDiv", "0.3.0")



Attach the package and use:
library("DarkDiv")
Maintained by
Carlos P. Carmona
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-04-27
Latest Update: 2020-07-15
Description:
Estimation of dark diversity and site-specific species pools using species co-occurrences. It includes implementations of probabilistic dark diversity based on the Hypergeometric distribution, as well as estimations based on the Beals index, which can be transformed to binary predictions using different thresholds, or transformed into a favorability index. All methods include the possibility of using a calibration dataset that is used to estimate the indication matrix between pairs of species, or to estimate dark diversity directly on a single dataset. See De Caceres and Legendre (2008) , Lewis et al. (2016) , Partel et al. (2011) , Real et al. (2017) for further information.
How to cite:
Carlos P. Carmona (2019). DarkDiv: Estimating Dark Diversity and Site-Specific Species Pools. R package version 0.3.0, https://cran.r-project.org/web/packages/DarkDiv. Accessed 17 Jul. 2026.
Previous versions and publish date:
0.1.0 (2019-04-27 18:10), 0.2.0 (2020-02-12 16:20), (2026-07-09 08:01)
Other packages that cited DarkDiv R package
View DarkDiv citation profile
Other R packages that DarkDiv depends, imports, suggests or enhances
Complete documentation for DarkDiv
Functions, R codes and Examples using the DarkDiv R package
Some associated functions: DarkDiv . 
Some associated R codes: DarkDiv.R . utility_functions.R .  Full DarkDiv package functions and examples
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