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DarkDiv
View on CRAN: Click
here
Download and install DarkDiv package within the R console
Install from CRAN:
install.packages("DarkDiv")
Install from Github:
library("remotes")
install_github("cran/DarkDiv")
Install by package version:
library("remotes")
install_version("DarkDiv", "0.3.0")
Attach the package and use:
library("DarkDiv")
Maintained by
Carlos P. Carmona
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-04-27
Latest Update: 2020-07-15
Description:
Estimation of dark diversity and site-specific species pools using species co-occurrences.
It includes implementations of probabilistic dark diversity based on the
Hypergeometric distribution, as well as estimations based on the Beals index,
which can be transformed to binary predictions using different thresholds,
or transformed into a favorability index. All methods include the possibility of
using a calibration dataset that is used to estimate the indication matrix
between pairs of species, or to estimate dark diversity directly on a single
dataset. See De Caceres and Legendre (2008) ,
Lewis et al. (2016) ,
Partel et al. (2011) , Real et al. (2017)
for further information.
How to cite:
Carlos P. Carmona (2019). DarkDiv: Estimating Dark Diversity and Site-Specific Species Pools. R package version 0.3.0, https://cran.r-project.org/web/packages/DarkDiv
Other packages that cited DarkDiv R package
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imports, suggests or enhances
Functions, R codes and Examples using
the DarkDiv R package
Some associated functions: DarkDiv .
Some associated R codes: DarkDiv.R . utility_functions.R . Full DarkDiv package functions and examples
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